picrust / picrust2Links
Code, unit tests, and tutorials for running PICRUSt2
☆377Updated 2 months ago
Alternatives and similar repositories for picrust2
Users that are interested in picrust2 are comparing it to the libraries listed below
Sorting:
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆456Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆454Updated 2 years ago
- A complete pipeline for metagenomic analysis☆441Updated last week
- Using R language in microbiome analysis☆347Updated 2 years ago
- Easy Amplicon data analysis pipeline☆340Updated 2 months ago
- bioBakery tools for meta'omic profiling☆305Updated 7 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆391Updated last month
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆401Updated 7 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆365Updated 5 months ago
- Accurate sample inference from amplicon data with single nucleotide resolution☆534Updated last month
- Rapid large-scale prokaryote pan genome analysis☆367Updated 2 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆231Updated last week
- Tutorials on phylogenetic and phylogenomic inference☆394Updated 2 years ago
- Make Picrust2 Output Analysis and Visualization Easier☆178Updated 3 weeks ago
- QIIME 2中文文档(QIIME 2 Chinese Manual)☆295Updated 2 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆231Updated last week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆244Updated 4 years ago
- 🌈 Interactive analysis of metagenomics data☆440Updated 4 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆469Updated last month
- Fast genome-wide functional annotation through orthology assignment☆689Updated 7 months ago
- A short tutorial for Tax4Fun2☆24Updated last year
- Easy Metagenome Pipeline☆513Updated last week
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆327Updated 2 years ago
- TransDecoder source☆301Updated 4 months ago
- Genome assembly evaluation tool☆488Updated last year
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆335Updated 11 months ago
- Rapid haploid variant calling and core genome alignment☆561Updated last month
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆454Updated 3 weeks ago
- Eukaryotic Genome Annotation Pipeline☆378Updated last week
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆402Updated 2 weeks ago