picrust / picrust2Links
Code, unit tests, and tutorials for running PICRUSt2
☆374Updated 2 weeks ago
Alternatives and similar repositories for picrust2
Users that are interested in picrust2 are comparing it to the libraries listed below
Sorting:
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆454Updated 11 months ago
- Using R language in microbiome analysis☆347Updated 2 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆452Updated 2 years ago
- Easy Amplicon data analysis pipeline☆335Updated 3 weeks ago
- A complete pipeline for metagenomic analysis☆439Updated this week
- bioBakery tools for meta'omic profiling☆297Updated 6 months ago
- Accurate sample inference from amplicon data with single nucleotide resolution☆529Updated 5 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆384Updated this week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆398Updated 6 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆360Updated 4 months ago
- QIIME 2中文文档(QIIME 2 Chinese Manual)☆294Updated 2 years ago
- Tutorials on phylogenetic and phylogenomic inference☆394Updated 2 years ago
- Make Picrust2 Output Analysis and Visualization Easier☆170Updated this week
- Rapid large-scale prokaryote pan genome analysis☆364Updated last month
- 🌈 Interactive analysis of metagenomics data☆437Updated 3 months ago
- A short tutorial for Tax4Fun2☆23Updated last year
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆227Updated 2 weeks ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆228Updated this week
- Easy Metagenome Pipeline☆498Updated this week
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆326Updated 2 years ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆331Updated 9 months ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆451Updated 7 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆336Updated 3 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆460Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆570Updated last week
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆398Updated this week
- Genome assembly evaluation tool☆487Updated last year
- A grammar of graphics for comparative genomics☆733Updated last month
- Eukaryotic Genome Annotation Pipeline☆369Updated 5 months ago