picrust / picrust2Links
Code, unit tests, and tutorials for running PICRUSt2
☆361Updated 2 months ago
Alternatives and similar repositories for picrust2
Users that are interested in picrust2 are comparing it to the libraries listed below
Sorting:
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆426Updated last year
- A complete pipeline for metagenomic analysis☆416Updated last week
- Easy Amplicon data analysis pipeline☆302Updated 2 months ago
- Using R language in microbiome analysis☆330Updated 2 years ago
- bioBakery tools for meta'omic profiling☆280Updated 3 weeks ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆446Updated 6 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆346Updated this week
- Accurate sample inference from amplicon data with single nucleotide resolution☆505Updated 2 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆374Updated last week
- QIIME 2中文文档(QIIME 2 Chinese Manual)☆286Updated last year
- Easy Metagenome Pipeline☆447Updated 4 months ago
- Fast genome-wide functional annotation through orthology assignment☆625Updated this week
- Mass screening of contigs for antimicrobial and virulence genes☆421Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆527Updated 3 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆343Updated last year
- Make Picrust2 Output Analysis and Visualization Easier☆138Updated last week
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆207Updated last week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆234Updated 4 years ago
- Rapid large-scale prokaryote pan genome analysis☆350Updated 3 years ago
- Helper Functions for Interactive Tree Of Life (iTOL)☆171Updated last month
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆310Updated 3 months ago
- ☆253Updated last year
- ☆111Updated 6 months ago
- An R package for data analysis in microbial community ecology☆232Updated this week
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆202Updated 10 months ago
- microbiome R package☆300Updated 6 months ago
- Metagenome analysis pipeline☆98Updated 3 years ago
- 🌈 Interactive analysis of metagenomics data☆421Updated 9 months ago
- Eukaryotic Genome Annotation Pipeline☆355Updated 3 weeks ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆312Updated last year