picrust / picrust2Links
Code, unit tests, and tutorials for running PICRUSt2
☆374Updated 2 weeks ago
Alternatives and similar repositories for picrust2
Users that are interested in picrust2 are comparing it to the libraries listed below
Sorting:
- Easy Amplicon data analysis pipeline☆333Updated 2 weeks ago
- Using R language in microbiome analysis☆346Updated 2 years ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆453Updated 11 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆451Updated 2 years ago
- A complete pipeline for metagenomic analysis☆439Updated last month
- bioBakery tools for meta'omic profiling☆296Updated 6 months ago
- Accurate sample inference from amplicon data with single nucleotide resolution☆527Updated 4 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆397Updated 5 months ago
- Tutorials on phylogenetic and phylogenomic inference☆393Updated 2 years ago
- QIIME 2中文文档(QIIME 2 Chinese Manual)☆294Updated 2 years ago
- Rapid large-scale prokaryote pan genome analysis☆362Updated last month
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆383Updated 2 weeks ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆360Updated 4 months ago
- 🌈 Interactive analysis of metagenomics data☆436Updated 2 months ago
- Make Picrust2 Output Analysis and Visualization Easier☆170Updated last month
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- Easy Metagenome Pipeline☆496Updated 2 weeks ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆323Updated 2 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆225Updated last week
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆227Updated 3 weeks ago
- Mass screening of contigs for antimicrobial and virulence genes☆460Updated this week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆571Updated last week
- Metagenome analysis pipeline☆100Updated 4 years ago
- A grammar of graphics for comparative genomics☆722Updated 3 weeks ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆331Updated 9 months ago
- ☆17Updated 5 months ago
- A short tutorial for Tax4Fun2☆23Updated last year
- Genome assembly evaluation tool☆485Updated last year
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆396Updated last week
- NCBI Prokaryotic Genome Annotation Pipeline☆362Updated 3 weeks ago