Alternatives and similar repositories for picrust2

Users that are interested in picrust2 are comparing it to the libraries listed below

• LangilleLab / microbiome_helper
  A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
  ☆452Updated 9 months ago
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆444Updated 2 years ago
• taowenmicro / EasyMicrobiomeR
  Using R language in microbiome analysis
  ☆341Updated 2 years ago
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆431Updated last month
• YongxinLiu / EasyAmplicon
  Easy Amplicon data analysis pipeline
  ☆321Updated 3 weeks ago
• biobakery / biobakery
  bioBakery tools for meta'omic profiling
  ☆285Updated 4 months ago
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆386Updated 3 months ago
• benjjneb / dada2
  Accurate sample inference from amplicon data with single nucleotide resolution
  ☆520Updated 2 months ago
• biobakery / MetaPhlAn
  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
  ☆369Updated last week
• YongxinLiu / QIIME2ChineseManual
  QIIME 2中文文档(QIIME 2 Chinese Manual)
  ☆292Updated 2 years ago
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆351Updated 2 months ago
• sanger-pathogens / Roary
  Rapid large-scale prokaryote pan genome analysis
  ☆355Updated 3 years ago
• mmatschiner / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆389Updated 2 years ago
• nf-core / ampliseq
  Amplicon sequencing analysis workflow using DADA2 and QIIME2
  ☆219Updated this week
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆216Updated last month
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆241Updated 4 years ago
• YongxinLiu / EasyMetagenome
  Easy Metagenome Pipeline
  ☆473Updated 2 months ago
• tseemann / abricate
  Mass screening of contigs for antimicrobial and virulence genes
  ☆436Updated last year
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆159Updated last week
• shenwei356 / taxonkit
  A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
  ☆437Updated 5 months ago
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆318Updated 2 years ago
• fbreitwieser / pavian
  🌈 Interactive analysis of metagenomics data
  ☆426Updated 3 weeks ago
• tseemann / snippy
  Rapid haploid variant calling and core genome alignment
  ☆545Updated last year
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆321Updated 7 months ago
• ablab / quast
  Genome assembly evaluation tool
  ☆467Updated 10 months ago
• marbits-icm / marbits-public
  ☆16Updated 3 months ago
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆553Updated last month
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆333Updated 3 weeks ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆363Updated 3 months ago
• arpcard / rgi
  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…
  ☆389Updated 2 weeks ago