microbiome / miaLinks
Microbiome analysis
☆51Updated last week
Alternatives and similar repositories for mia
Users that are interested in mia are comparing it to the libraries listed below
Sorting:
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆94Updated 2 months ago
- R shiny app for interactive microbiome analysis☆55Updated 3 weeks ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆26Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last week
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 4 years ago
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆71Updated 3 weeks ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆123Updated last month
- Statistical analysis for sparse high-throughput sequencing☆69Updated 6 months ago
- diversity estimation under ecological networks☆83Updated 2 months ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 weeks ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆63Updated 3 years ago
- R implementation of the LEfSe method☆59Updated 2 months ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated 3 months ago
- Workshop materials for shotgun metagenomics☆36Updated 7 years ago
- A microbiome analysis toolkit for R☆23Updated last year
- Genome wide orthology inference and dNdS estimation☆94Updated last year
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Creating plasmid maps inside ggplot.☆87Updated 6 months ago
- Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.☆21Updated 6 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆33Updated 5 years ago
- ☆23Updated 5 years ago
- An interactive web-tool for RNA-seq analysis☆68Updated 4 months ago
- 𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of …☆64Updated last year
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago