Alternatives and similar repositories for SpiecEasi

Users that are interested in SpiecEasi are comparing it to the libraries listed below

• stefpeschel / NetCoMi
  Network construction, analysis, and comparison for microbial compositional data
  ☆172Updated 3 weeks ago
• jbisanz / qiime2R
  Import qiime2 artifacts to R
  ☆173Updated last year
• yiluheihei / microbiomeMarker
  R package for microbiome biomarker discovery
  ☆192Updated 10 months ago
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆167Updated 4 months ago
• microbiome / microbiome
  microbiome R package
  ☆308Updated 4 months ago
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆190Updated 2 months ago
• picrust / picrust
  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…
  ☆91Updated 4 months ago
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆126Updated 4 months ago
• microsud / Tools-Microbiome-Analysis
  A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
  ☆117Updated 2 years ago
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆173Updated this week
• UMNFuN / FUNGuild
  FUNGuild: parsing OTUs into functional guilds
  ☆124Updated last year
• ryanjw / co-occurrence
  R scripts for performing co-occurrence analyses
  ☆35Updated 11 years ago
• waldronlab / curatedMetagenomicData
  Curated Metagenomic Data of the Human Microbiome
  ☆147Updated 2 months ago
• umerijaz / microbiomeSeq
  An R package for microbial community analysis in an environmental context
  ☆67Updated 5 years ago
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆123Updated 5 months ago
• yhwu / idemp
  Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files
  ☆32Updated 8 years ago
• RiceMicrobiome / Edwards-et-al.-2014
  ☆14Updated 11 years ago
• ChiLiubio / microeco
  An R package for data analysis in microbial community ecology
  ☆259Updated this week
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated 2 months ago
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆139Updated last month
• FrederickHuangLin / ANCOM-Code-Archive
  Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…
  ☆61Updated 3 years ago
• microbiome / OMA
  Orchestrating Microbiome Analysis
  ☆106Updated last month
• cozygene / FEAST
  Fast expectation maximization for microbial source tracking
  ☆136Updated last year
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆72Updated 2 years ago
• DaliangNing / iCAMP1
  Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
  ☆91Updated 3 months ago
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆106Updated last month
• danknights / sourcetracker
  ☆79Updated 2 years ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆72Updated 3 years ago
• biobakery / Maaslin2
  MaAsLin2: Microbiome Multivariate Association with Linear Models
  ☆151Updated 3 weeks ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆47Updated 3 months ago