zdk123 / SpiecEasi
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
☆210Updated last year
Alternatives and similar repositories for SpiecEasi
Users that are interested in SpiecEasi are comparing it to the libraries listed below
Sorting:
- Network construction, analysis, and comparison for microbial compositional data☆165Updated last month
- R package for microbiome biomarker discovery☆183Updated 2 months ago
- microbiome R package☆299Updated 5 months ago
- Import qiime2 artifacts to R☆169Updated 5 months ago
- An R package for data analysis in microbial community ecology☆230Updated 2 weeks ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆156Updated 2 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆122Updated last month
- Make Picrust2 Output Analysis and Visualization Easier☆130Updated this week
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated last month
- A comprehensive R package for deep mining microbiome☆187Updated 3 weeks ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆113Updated 2 years ago
- Microbial ecological network visualization clustering☆111Updated last month
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆74Updated 3 months ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆89Updated 2 years ago
- FUNGuild: parsing OTUs into functional guilds☆117Updated last year
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆137Updated 6 months ago
- Accurate sample inference from amplicon data with single nucleotide resolution☆495Updated last month
- Phylogenetic analysis in R☆207Updated last week
- Code, unit tests, and tutorials for running PICRUSt2☆346Updated last month
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆114Updated 3 weeks ago
- Statistics and visualization for amplicon data☆70Updated 2 years ago
- A short tutorial for Tax4Fun2☆17Updated 8 months ago
- A companion R package for the MicrobiomeAnalyst web server☆123Updated last week
- Various functions for analysis of microbial community data☆44Updated 2 years ago
- diversity estimation under ecological networks☆83Updated 3 weeks ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Genomic Data Retrieval with R☆221Updated 3 months ago
- ☆16Updated last week
- ☆74Updated last year
- ☆21Updated 5 years ago