ggloor / ALDEx_biocLinks
ALDEx_bioc is the working directory for updating bioconductor
☆29Updated 5 months ago
Alternatives and similar repositories for ALDEx_bioc
Users that are interested in ALDEx_bioc are comparing it to the libraries listed below
Sorting:
- ☆28Updated last year
- Linear Decomposition Model☆25Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 3 weeks ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 9 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- tidyMicro GitHup Repository☆19Updated 3 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Working with the outputs of sourmash in R☆27Updated last year
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- A microbiome analysis toolkit for R☆24Updated 2 years ago
- ☆13Updated 5 years ago
- Simple R utilities for working with HMMER☆20Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆10Updated 4 years ago
- Plot microbiome time series in parallel☆27Updated last year
- R package for microbial pangenomics☆24Updated 3 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- selbal: selection of balances for microbial signatures☆32Updated 8 months ago
- diversity estimation under ecological networks☆83Updated 3 months ago