ggloor / ALDEx_biocLinks
ALDEx_bioc is the working directory for updating bioconductor
☆28Updated 3 months ago
Alternatives and similar repositories for ALDEx_bioc
Users that are interested in ALDEx_bioc are comparing it to the libraries listed below
Sorting:
- ☆27Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- Linear Decomposition Model☆24Updated 2 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆38Updated 9 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 2 weeks ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 weeks ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 4 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- Speedy versions of phyloseq functions☆48Updated last year
- accessory functions for processing microbial community data☆12Updated 2 years ago
- selbal: selection of balances for microbial signatures☆32Updated 6 months ago
- ☆13Updated 5 years ago
- Simple R utilities for working with HMMER☆20Updated 10 months ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Working with the outputs of sourmash in R☆29Updated last year
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated last year
- A shiny package for microbiome functional enrichment analysis☆37Updated 4 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- diversity estimation under ecological networks☆84Updated last month
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Implementation of CoNet in R☆16Updated 5 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- Tools for visualising microbial community amplicon data☆67Updated last week