nf-core / funcscanLinks
(Meta-)genome screening for functional and natural product gene sequences
☆95Updated last week
Alternatives and similar repositories for funcscan
Users that are interested in funcscan are comparing it to the libraries listed below
Sorting:
- ☆79Updated this week
- Simple bacterial assembly and annotation pipeline☆79Updated last month
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- An R package designed for drawing gene arrow maps☆92Updated last month
- Bioinformatics Tools☆89Updated last month
- ARG normalization by mapping to the ARO ontology.☆59Updated 3 months ago
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆32Updated 5 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆74Updated 6 months ago
- WtP: Phage identification via nextflow and docker or singularity☆105Updated this week
- Making whole bacterial genome sequencing data analysis easy☆113Updated 6 months ago
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆59Updated last year
- A scalable bacterial genome assembly, annotation and analysis pipeline☆75Updated last year
- BEAV: Bacterial Element Annotation reVamped☆72Updated 2 months ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆168Updated this week
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆60Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆80Updated 2 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- gutSMASH☆56Updated last month
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆98Updated 2 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆101Updated 3 years ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆103Updated 7 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 6 months ago
- A listing of software, tools and databases useful for virome analysis☆52Updated this week