(Meta-)genome screening for functional and natural product gene sequences
☆103Mar 30, 2026Updated last week
Alternatives and similar repositories for funcscan
Users that are interested in funcscan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆184Updated this week
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆239Mar 31, 2026Updated last week
- Assembly and binning of metagenomes☆283Apr 1, 2026Updated last week
- Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.☆34Mar 25, 2026Updated 2 weeks ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆106Jan 22, 2026Updated 2 months ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 2 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated last year
- A flexible pipeline for complete analysis of bacterial genomes☆502Mar 31, 2026Updated last week
- Pipeline to fetch metadata and raw FastQ files from public databases☆189Feb 8, 2026Updated 2 months ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Similarity networks of biosynthetic gene clusters☆165Apr 1, 2026Updated last week
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 4 months ago
- antiSMASH☆251Mar 24, 2026Updated 2 weeks ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Mar 31, 2026Updated last week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆48Feb 5, 2026Updated 2 months ago
- Simple bacterial assembly and annotation pipeline☆85Mar 24, 2026Updated 2 weeks ago
- Real-time analysis pipeline for nanopore 16S rRNA data☆15Nov 29, 2022Updated 3 years ago
- GEne Cluster prediction with COnditional random fields.☆84Mar 10, 2026Updated 3 weeks ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆52Dec 22, 2024Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆326Mar 30, 2026Updated last week
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- Build a partitioned pangenome graph from microbial genomes☆296Mar 30, 2026Updated last week
- ☆90Mar 25, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆301Feb 3, 2026Updated 2 months ago
- whole genome MLST analysis☆51Mar 27, 2026Updated last week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 7 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 2 months ago
- A complete pipeline for metagenomic analysis☆439Mar 11, 2026Updated 3 weeks ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Oct 24, 2025Updated 5 months ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆64Mar 3, 2026Updated last month
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆18Jun 3, 2025Updated 10 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Bioinformatics program inStrain☆183Mar 12, 2026Updated 3 weeks ago
- A package to annotate protein sequences☆63Feb 23, 2025Updated last year
- A toolkit for prokaryotic comparative genomics☆51Feb 23, 2026Updated last month
- geNomad: Identification of mobile genetic elements☆297Mar 29, 2026Updated last week
- Read alignment statistics for metagenomics☆395Mar 16, 2026Updated 3 weeks ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆98Aug 11, 2025Updated 7 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆91Apr 2, 2026Updated last week