Alternatives and similar repositories for funcscan:

Users that are interested in funcscan are comparing it to the libraries listed below

• EBI-Metagenomics / mettannotator
  ☆65Updated 2 months ago
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆65Updated last year
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆76Updated last year
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆136Updated this week
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆88Updated this week
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆27Updated last year
• dbeisser / Natrix2
  Open-source bioinformatics pipeline for the preprocessing of raw amplicon sequencing / metabarcoding data.
  ☆12Updated 2 months ago
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆68Updated last month
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆54Updated this week
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆60Updated 5 months ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆68Updated last year
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆20Updated last year
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆71Updated 2 years ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆115Updated last year
• victoriapascal / gutsmash
  gutSMASH
  ☆53Updated 2 months ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆70Updated 3 years ago
• Gibbons-Lab / isb_course_2023
  Materials and presentation for the 2023 ISB Microbiome course.
  ☆24Updated 5 months ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆45Updated last month
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆69Updated last week
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆52Updated 10 months ago
• smdabdoub / kraken-biom
  Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…
  ☆52Updated 2 years ago
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆74Updated 5 months ago
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆53Updated 7 months ago
• Carrion-lab / bacLIFE
  ☆40Updated this week
• happykhan / BRIG
  BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…
  ☆33Updated 5 years ago
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆61Updated 4 months ago
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆88Updated 6 months ago
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆103Updated 3 months ago
• qiyunzhu / woltka
  Woltka: a versatile meta'omic data classifier
  ☆72Updated 4 months ago
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆185Updated 7 months ago