Alternatives and similar repositories for funcscan

Users that are interested in funcscan are comparing it to the libraries listed below

• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆81Updated last week
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆88Updated 2 years ago
• BigDataBiology / argNorm
  ARG normalization by mapping to the ARO ontology.
  ☆62Updated 6 months ago
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆81Updated 9 months ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆95Updated 4 months ago
• EBI-Metagenomics / mettannotator
  ☆81Updated 2 months ago
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆82Updated 4 months ago
• AstrobioMike / bit
  Bioinformatics Tools
  ☆90Updated 2 weeks ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆68Updated 4 years ago
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆158Updated last week
• transcript / samsa2
  SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…
  ☆61Updated last year
• voorloopnul / awesome-phages
  A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
  ☆49Updated 3 years ago
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆89Updated last year
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆67Updated 2 years ago
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆57Updated 9 months ago
• bokulich-lab / RESCRIPt
  REference Sequence annotation and CuRatIon Pipeline
  ☆98Updated last week
• ablab / viralVerify
  viralVerify: viral contig verification tool
  ☆74Updated 4 years ago
• replikation / What_the_Phage
  WtP: Phage identification via nextflow and docker or singularity
  ☆103Updated this week
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆67Updated last year
• shandley / awesome-virome
  A listing of software, tools and databases useful for virome analysis
  ☆60Updated this week
• EBI-Metagenomics / emg-viral-pipeline
  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
  ☆146Updated last month
• victoriapascal / gutsmash
  gutSMASH
  ☆57Updated 4 months ago
• soedinglab / spacepharer
  SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
  ☆44Updated last year
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆102Updated 2 years ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆81Updated 2 years ago
• EBI-Metagenomics / EukCC
  Tool to estimate genome quality of microbial eukaryotes
  ☆38Updated 6 months ago
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆22Updated 2 years ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆71Updated last month
• linsalrob / PhiSpy
  Prediction of prophages from bacterial genomes
  ☆81Updated this week
• qiyunzhu / woltka
  Woltka: a versatile meta'omic data classifier
  ☆76Updated 4 months ago