benjjneb / dada2
Accurate sample inference from amplicon data with single nucleotide resolution
☆487Updated last month
Alternatives and similar repositories for dada2:
Users that are interested in dada2 are comparing it to the libraries listed below
- Code, unit tests, and tutorials for running PICRUSt2☆342Updated 2 weeks ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆600Updated 10 months ago
- microbiome R package☆294Updated 3 months ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆442Updated 3 months ago
- A complete pipeline for metagenomic analysis☆399Updated last week
- bioBakery tools for meta'omic profiling☆272Updated 5 months ago
- A grammar of graphics for comparative genomics☆654Updated last month
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆527Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆416Updated last year
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆271Updated 2 months ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆207Updated last year
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆195Updated last week
- Import qiime2 artifacts to R☆168Updated 3 months ago
- Tutorials on phylogenetic and phylogenomic inference☆377Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆362Updated 6 months ago
- Rapid large-scale prokaryote pan genome analysis☆338Updated 2 years ago
- Make Picrust2 Output Analysis and Visualization Easier☆125Updated last month
- An R package for data analysis in microbial community ecology☆219Updated this week
- Official repository for the QIIME 2 framework.☆495Updated last month
- Fast genome-wide functional annotation through orthology assignment☆596Updated 10 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆303Updated 3 weeks ago
- R package for microbiome biomarker discovery☆177Updated last month
- Phylogenetic orthology inference for comparative genomics☆745Updated 4 months ago
- Differential expression of RNA-seq data using the Negative Binomial☆380Updated 2 weeks ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆328Updated last week
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆307Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆153Updated 2 years ago
- Using R language in microbiome analysis☆312Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆221Updated 4 years ago