Accurate sample inference from amplicon data with single nucleotide resolution
☆541Feb 13, 2026Updated last month
Alternatives and similar repositories for dada2
Users that are interested in dada2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆643Feb 27, 2026Updated 3 weeks ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆170Sep 4, 2025Updated 6 months ago
- Versatile open-source tool for microbiome analysis☆742Mar 16, 2026Updated last week
- microbiome R package☆314Aug 19, 2025Updated 7 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆238Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code, unit tests, and tutorials for running PICRUSt2☆384Nov 27, 2025Updated 3 months ago
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆32Jun 21, 2017Updated 8 years ago
- QIIME 2 plugin wrapping DADA2☆22Jan 27, 2026Updated last month
- Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))☆525Mar 13, 2026Updated last week
- ☆43Jul 31, 2017Updated 8 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆98Jul 12, 2024Updated last year
- Import qiime2 artifacts to R☆176Dec 12, 2024Updated last year
- Count Regression for Correlated Observations with the Beta-binomial☆107Nov 13, 2025Updated 4 months ago
- An analysis and visualization platform for 'omics data☆509Mar 19, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆541Mar 16, 2026Updated last week
- A robust and fast clustering method for amplicon-based studies☆146Mar 10, 2026Updated 2 weeks ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆131Mar 14, 2026Updated last week
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆83May 14, 2019Updated 6 years ago
- diversity estimation under ecological networks☆83Jul 29, 2025Updated 7 months ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆230Updated this week
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆50Mar 6, 2024Updated 2 years ago
- Prodigal Gene Prediction Software☆529Jan 23, 2024Updated 2 years ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- The second version of the Kraken taxonomic sequence classification system☆879Mar 10, 2026Updated 2 weeks ago
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Oct 23, 2018Updated 7 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆301Apr 25, 2025Updated 11 months ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆458Feb 13, 2026Updated last month
- An R package for downstream data analysis of microbiome omics data☆272Mar 17, 2026Updated last week
- R package for community ecologists: popular ordination methods, ecological null models & diversity analysis☆522Updated this week
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆587Feb 21, 2026Updated last month
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆92Aug 22, 2025Updated 7 months ago
- R package for microbiome biomarker discovery☆194Feb 19, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- 🌈 Interactive analysis of metagenomics data☆445Sep 17, 2025Updated 6 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆404Mar 2, 2026Updated 3 weeks ago
- Interactively explore metagenomes and more from a web browser.☆496Dec 22, 2021Updated 4 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆172Mar 13, 2026Updated last week
- Rapid prokaryotic genome annotation☆961Jan 6, 2026Updated 2 months ago
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆276Jan 13, 2026Updated 2 months ago
- Qiita - A multi-omics databasing effort☆128Feb 16, 2026Updated last month