Count Regression for Correlated Observations with the Beta-binomial
☆106Nov 13, 2025Updated 3 months ago
Alternatives and similar repositories for corncob
Users that are interested in corncob are comparing it to the libraries listed below
Sorting:
- diversity estimation under ecological networks☆83Jul 29, 2025Updated 7 months ago
- Species richness with high diversity☆68Aug 5, 2025Updated 6 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Jan 24, 2024Updated 2 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Nov 24, 2025Updated 3 months ago
- ☆19Updated this week
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated last year
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆30May 1, 2025Updated 9 months ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 6 years ago
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 4 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆130Sep 5, 2025Updated 5 months ago
- Vanilla regression methods for microbiome differential abundance analysis☆61Nov 3, 2020Updated 5 years ago
- Tools for analyzing trees☆13Apr 16, 2025Updated 10 months ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23Jun 27, 2022Updated 3 years ago
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆77Feb 13, 2026Updated 2 weeks ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆122Feb 17, 2026Updated last week
- Fit LOg-RAtio Lasso regression for compositional covariates☆15Feb 8, 2026Updated 2 weeks ago
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Nov 24, 2015Updated 10 years ago
- ☆63Dec 16, 2025Updated 2 months ago
- Python package to study microbial communities using metabolic modeling.☆120Jan 26, 2026Updated last month
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 3 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25May 18, 2024Updated last year
- Curated Metagenomic Data of the Human Microbiome☆150Jan 21, 2026Updated last month
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- microbiome R package☆311Aug 19, 2025Updated 6 months ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆85Nov 3, 2025Updated 3 months ago
- Easy plotting of periodic data with ggplot2☆21Oct 30, 2023Updated 2 years ago
- Tools for visualising microbial community amplicon data☆71Nov 3, 2025Updated 3 months ago
- ☆58Mar 14, 2024Updated last year
- Accurate sample inference from amplicon data with single nucleotide resolution☆539Feb 13, 2026Updated 2 weeks ago
- A complete pipeline for metagenomic analysis☆441Jan 21, 2026Updated last month
- R6 object-oriented interface for mathematical sets.☆14Sep 29, 2023Updated 2 years ago
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆36Sep 23, 2020Updated 5 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆47Feb 16, 2026Updated last week
- Network construction, analysis, and comparison for microbial compositional data☆176Dec 18, 2025Updated 2 months ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Jul 13, 2020Updated 5 years ago
- Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA☆13Jul 25, 2024Updated last year
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆31Oct 19, 2020Updated 5 years ago