Count Regression for Correlated Observations with the Beta-binomial
☆107Nov 13, 2025Updated 4 months ago
Alternatives and similar repositories for corncob
Users that are interested in corncob are comparing it to the libraries listed below
Sorting:
- Species richness with high diversity☆68Aug 5, 2025Updated 7 months ago
- diversity estimation under ecological networks☆83Jul 29, 2025Updated 7 months ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Nov 24, 2025Updated 3 months ago
- ☆19Mar 8, 2026Updated last week
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Jan 24, 2024Updated 2 years ago
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated last year
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 6 years ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆15Feb 8, 2026Updated last month
- STAMPS 2018 course☆15Aug 8, 2018Updated 7 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆30May 1, 2025Updated 10 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆131Updated this week
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆61Nov 3, 2020Updated 5 years ago
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 4 years ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆85Nov 3, 2025Updated 4 months ago
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆78Feb 13, 2026Updated last month
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- Tools for analyzing trees☆13Apr 16, 2025Updated 11 months ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23Jun 27, 2022Updated 3 years ago
- ☆64Mar 13, 2026Updated last week
- ☆58Mar 14, 2024Updated 2 years ago
- Accurate sample inference from amplicon data with single nucleotide resolution☆541Feb 13, 2026Updated last month
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆123Feb 27, 2026Updated 3 weeks ago
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- Microbiome analysis☆54Updated this week
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Nov 24, 2015Updated 10 years ago
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆36Sep 23, 2020Updated 5 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 3 years ago
- ☆20Jun 8, 2020Updated 5 years ago
- An interactive web application for demonstrating and using phyloseq.☆60Jul 18, 2019Updated 6 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆24Jun 9, 2021Updated 4 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Aug 2, 2022Updated 3 years ago
- MAGScoT - a MAG scoring and refinement tool☆43Oct 10, 2024Updated last year
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Jul 13, 2020Updated 5 years ago
- Tools for visualising microbial community amplicon data☆72Nov 3, 2025Updated 4 months ago
- Transform files to the microtable object with microeco package☆28Feb 13, 2026Updated last month
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 2 years ago
- microbiome R package☆314Aug 19, 2025Updated 7 months ago