nick-youngblut / traitar3
From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
☆22Updated 7 months ago
Alternatives and similar repositories for traitar3:
Users that are interested in traitar3 are comparing it to the libraries listed below
- A functional profiler for metagenomes using FracMinHash☆15Updated last week
- ☆22Updated last year
- Metagenomic Estimation of Dietary Intake and Content.☆17Updated 3 weeks ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆12Updated last year
- Dadaist2 🟨 Highway to R☆13Updated last month
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Prediction of microbial interactions in complex communities☆12Updated 6 months ago
- Metabolic scanning and annotation of Metagenomes☆10Updated 2 months ago
- Tools for analyzing trees☆14Updated last year
- ☆10Updated 3 weeks ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated 10 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 6 months ago
- Resolving Species Level Classification Using Emu☆12Updated 8 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 11 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆32Updated 2 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 3 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆43Updated this week
- TAXnomic Profile Aggregation and STAndardisation☆35Updated 3 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆31Updated 5 months ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Detect contigs of complete circular genomes☆22Updated 5 years ago