Alternatives and similar repositories for DivNet:

Users that are interested in DivNet are comparing it to the libraries listed below

• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated 2 weeks ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆106Updated last month
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆48Updated last year
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated 2 months ago
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆67Updated 2 weeks ago
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆50Updated last month
• Russel88 / DAtest
  Compare different differential abundance and expression methods
  ☆51Updated 3 years ago
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆27Updated 3 months ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆70Updated 2 years ago
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆122Updated last month
• yhwu / idemp
  Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files
  ☆31Updated 7 years ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 2 years ago
• umerijaz / microbiomeSeq
  An R package for microbial community analysis in an environmental context
  ☆67Updated 4 years ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆43Updated 2 years ago
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆74Updated last month
• spholmes / F1000_workflow
  ☆43Updated 7 years ago
• frederic-mahe / swarm
  A robust and fast clustering method for amplicon-based studies
  ☆31Updated 2 years ago
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆36Updated 9 years ago
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆41Updated 11 months ago
• leffj / mctoolsr
  Microbial community analysis tools in R
  ☆21Updated 2 years ago
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 2 years ago
• microsud / microbiomeutilities
  The is mostly a wrapper tool using phyloseq and microbiome R packages.
  ☆34Updated 2 years ago
• ggloor / CoDaSeq
  Functions for compositional analysis of high throughput sequencing
  ☆29Updated last year
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆30Updated 9 months ago
• ShadeLab / ConditionallyRareTaxa
  R scripts and tutorial datasets to detect conditionally rare taxa in time series of microbial communities
  ☆20Updated 4 years ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆33Updated 4 years ago
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆24Updated last year
• frederic-mahe / stampa
  Sequence Taxonomic Assignment by Massive Pairwise Alignments
  ☆14Updated last year
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆53Updated 3 months ago