adw96 / DivNetLinks
diversity estimation under ecological networks
☆84Updated 3 months ago
Alternatives and similar repositories for DivNet
Users that are interested in DivNet are comparing it to the libraries listed below
Sorting:
- Species richness with high diversity☆68Updated 3 months ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated 3 months ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆38Updated 9 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Miscellaneous functions for metagenomic analysis.☆50Updated last month
- Tools for visualising microbial community amplicon data☆67Updated 2 months ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 4 months ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 4 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆122Updated last month
- A comprehensive and customizable R package for microbiome analysis.☆23Updated last month
- Linear Decomposition Model☆24Updated 2 years ago
- Compare different differential abundance and expression methods☆50Updated 3 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated last year
- Various functions for analysis of microbial community data☆45Updated 2 years ago
- functions for analyzing phyloseq data☆28Updated 5 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Analysis of Phylogenetics and Evolution☆69Updated last month
- An R package for microbial community analysis in an environmental context☆67Updated 4 years ago
- Pairwise multilevel comparison using adonis☆77Updated 2 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆115Updated 3 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆18Updated last month
- 16S taxonomy assignment using an ecosystem-specific database.☆17Updated 2 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Simple R utilities for working with HMMER☆20Updated 9 months ago
- ☆43Updated 7 years ago