Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
☆49Apr 20, 2026Updated last month
Alternatives and similar repositories for MicrobiomeStat
Users that are interested in MicrobiomeStat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Make Picrust2 Output Analysis and Visualization Easier☆195May 10, 2026Updated 2 weeks ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆134Apr 27, 2026Updated 3 weeks ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Nov 24, 2015Updated 10 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆44Apr 8, 2024Updated 2 years ago
- R implementation of the LEfSe method☆66May 14, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆170Sep 4, 2025Updated 8 months ago
- 'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and prov…☆18May 13, 2026Updated last week
- ☆20Jan 12, 2017Updated 9 years ago
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Dec 5, 2025Updated 5 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆37Oct 26, 2020Updated 5 years ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆20Jul 26, 2024Updated last year
- Species richness with high diversity☆68Apr 20, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pan-genome Analysis☆12May 4, 2025Updated last year
- Population genomics from metagenomes☆13Sep 1, 2024Updated last year
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 8 months ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Oct 29, 2025Updated 6 months ago
- Code, unit tests, and tutorials for running PICRUSt2☆388Nov 27, 2025Updated 5 months ago
- SourceTracker2☆88Jul 10, 2024Updated last year
- GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using referen…☆13Nov 6, 2020Updated 5 years ago
- Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool☆10May 5, 2026Updated 2 weeks ago
- A comprehensive R package for deep mining microbiome☆194Apr 29, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 10 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆149Dec 17, 2025Updated 5 months ago
- R package for microbiome biomarker discovery☆197Feb 19, 2025Updated last year
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- A fast terminal-based viewer and command-line toolkit for molecular sequences (DNA, AA). View, translate, convert (to FASTA), and combine…☆41Mar 10, 2026Updated 2 months ago
- A repository for large-scale microbiome datasets, formatted for phyloseq☆42Apr 8, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆17Feb 3, 2023Updated 3 years ago
- Code to run the shiny functions for the MASAME suite☆28Feb 4, 2020Updated 6 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆99Jul 12, 2024Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆83May 13, 2026Updated last week
- ☆34Sep 5, 2024Updated last year
- Primer design from single genes to whole gene families for unlocking the tree of life☆16May 14, 2026Updated last week
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago