Alternatives and similar repositories for MicrobiomeStat

Users that are interested in MicrobiomeStat are comparing it to the libraries listed below

• benjjneb / LRASManuscript
  Reproducible Analyses accompanying DADA2 + PacBio Manuscript
  ☆33Updated 5 years ago
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆61Updated 3 weeks ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆54Updated 5 months ago
• biobakery / maaslin3
  MaAsLin3: Microbiome Multivariate Association with Linear Models
  ☆49Updated 3 weeks ago
• ChiLiubio / file2meco
  Transform files to the microtable object with microeco package
  ☆28Updated last month
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆71Updated 11 months ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆72Updated 3 years ago
• lch14forever / microbiomeViz
  Visualize microbiome data with black magic ggtree
  ☆68Updated 5 years ago
• nearinj / Comparison_of_DA_microbiome_methods
  ☆58Updated last year
• thomazbastiaanssen / Tjazi
  A microbiome analysis toolkit for R
  ☆24Updated 2 years ago
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆36Updated 2 years ago
• caporaso-lab / sourcetracker2
  SourceTracker2
  ☆81Updated last year
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆122Updated last year
• smdabdoub / kraken-biom
  Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…
  ☆57Updated 3 years ago
• Zymo-Research / figaro
  An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
  ☆94Updated last year
• danknights / sourcetracker
  ☆78Updated 2 years ago
• karkman / MetagenomeCourse2019
  Course material for the metagenomics course
  ☆46Updated 3 years ago
• scwatts / fastspar
  Rapid and scalable correlation estimation for compositional data
  ☆95Updated last year
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆41Updated last year
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆53Updated 3 years ago
• EnvGen / metagenomics-workshop
  Metagenomics Workshop
  ☆28Updated 9 years ago
• gavinmdouglas / picrust2_manuscript
  ☆24Updated 5 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated last month
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 3 years ago
• FrederickHuangLin / ANCOM-Code-Archive
  Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…
  ☆61Updated 3 years ago
• knights-lab / BugBase
  ☆41Updated 8 years ago
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆31Updated 3 years ago
• Finn-Lab / MGS-gut
  Analysing Metagenomic Species (MGS)
  ☆42Updated 5 years ago
• victoriapascal / gutsmash
  gutSMASH
  ☆55Updated 2 months ago
• malucalle / selbal
  selbal: selection of balances for microbial signatures
  ☆32Updated 9 months ago