Alternatives and similar repositories for microViz

Users that are interested in microViz are comparing it to the libraries listed below

• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆128Updated 4 months ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆72Updated 3 years ago
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆78Updated 5 months ago
• Russel88 / DAtest
  Compare different differential abundance and expression methods
  ☆52Updated 3 years ago
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆63Updated last month
• ChiLiubio / file2meco
  Transform files to the microtable object with microeco package
  ☆28Updated 2 months ago
• microsud / Tools-Microbiome-Analysis
  A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
  ☆117Updated 2 years ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆55Updated 6 months ago
• lch14forever / microbiomeViz
  Visualize microbiome data with black magic ggtree
  ☆68Updated 5 years ago
• stefpeschel / NetCoMi
  Network construction, analysis, and comparison for microbial compositional data
  ☆172Updated 3 weeks ago
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆123Updated last year
• FrederickHuangLin / ANCOM-Code-Archive
  Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…
  ☆61Updated 3 years ago
• ggloor / CoDaSeq
  Functions for compositional analysis of high throughput sequencing
  ☆29Updated 2 years ago
• nearinj / Comparison_of_DA_microbiome_methods
  ☆58Updated last year
• danknights / sourcetracker
  ☆79Updated 2 years ago
• knightlab-analyses / reference-frames
  ☆20Updated 5 years ago
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆104Updated last month
• caporaso-lab / sourcetracker2
  SourceTracker2
  ☆83Updated last year
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 3 years ago
• jbisanz / qiime2R
  Import qiime2 artifacts to R
  ☆173Updated last year
• umerijaz / microbiomeSeq
  An R package for microbial community analysis in an environmental context
  ☆67Updated 5 years ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆72Updated 2 years ago
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆41Updated last year
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆28Updated 11 months ago
• microbiome / OMA
  Orchestrating Microbiome Analysis
  ☆106Updated last month
• simon-ho / SydneyPhyloWorkshop
  Sydney Phylogenetics Workshop
  ☆68Updated 6 months ago
• bacteria-archaea-traits / bacteria-archaea-traits
  A synthesis of bacterial and archaeal phenotypic trait data
  ☆35Updated 2 years ago
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆70Updated 2 months ago
• bulksoil / BioProtocol
  Repo for a Microbiome Protocol
  ☆10Updated 7 years ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated 5 months ago