R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
☆128Jun 1, 2026Updated last week
Alternatives and similar repositories for microViz
Users that are interested in microViz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Orchestrating Microbiome Analysis☆109May 24, 2026Updated 3 weeks ago
- ☆43Jul 31, 2017Updated 8 years ago
- microbiome R package☆317May 12, 2026Updated last month
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆155Feb 5, 2026Updated 4 months ago
- A comprehensive R package for deep mining microbiome☆196Apr 29, 2026Updated last month
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Nov 23, 2022Updated 3 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆136Apr 27, 2026Updated last month
- An R package for downstream data analysis of microbiome omics data☆280Updated this week
- Microbiome analysis☆57Jun 1, 2026Updated 2 weeks ago
- R package for microbiome biomarker discovery☆199Feb 19, 2025Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆334Jun 3, 2026Updated last week
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆53May 8, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fit LOg-RAtio Lasso regression for compositional covariates☆16Jun 5, 2026Updated last week
- Species richness with high diversity☆68Apr 20, 2026Updated last month
- Count Regression for Correlated Observations with the Beta-binomial☆108Nov 13, 2025Updated 7 months ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆52May 8, 2026Updated last month
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆25Jan 24, 2024Updated 2 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆164Jun 7, 2026Updated last week
- R shiny app for interactive microbiome analysis☆56Jun 5, 2025Updated last year
- Site that contains musings and code for compositional analysis of high throughput sequencing experiments☆17Apr 18, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆307Feb 3, 2026Updated 4 months ago
- Woltka: a versatile meta'omic data classifier☆80Sep 8, 2025Updated 9 months ago
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 4 months ago
- A shiny package for microbiome functional enrichment analysis☆42Jun 1, 2026Updated 2 weeks ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- A user-friendly workflow for phylogenomics☆229May 12, 2026Updated last month
- BEAV: Bacterial Element Annotation reVamped☆77Aug 21, 2025Updated 9 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ARG normalization by mapping to the ARO ontology.☆67May 23, 2026Updated 3 weeks ago
- Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical bi…☆18Sep 1, 2023Updated 2 years ago
- Public repository for cFMD - curatedFoodMetagenomicData☆35Updated this week
- Bioinformatics program inStrain☆188Mar 12, 2026Updated 3 months ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆83May 13, 2026Updated last month
- Network construction, analysis, and comparison for microbial compositional data☆179Dec 18, 2025Updated 5 months ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆87Nov 3, 2025Updated 7 months ago