david-barnett / microVizLinks
R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
☆114Updated 2 months ago
Alternatives and similar repositories for microViz
Users that are interested in microViz are comparing it to the libraries listed below
Sorting:
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆123Updated last month
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆115Updated 2 years ago
- R implementation of the LEfSe method☆59Updated 2 months ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆119Updated last year
- ☆56Updated last year
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆76Updated 3 months ago
- Make Picrust2 Output Analysis and Visualization Easier☆138Updated last week
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆142Updated 7 months ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆63Updated 3 years ago
- R package for microbiome biomarker discovery☆185Updated 4 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆158Updated 2 years ago
- Network construction, analysis, and comparison for microbial compositional data☆167Updated 3 months ago
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆29Updated 7 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆32Updated 2 years ago
- functions to analyse sanger sequencing reads in R☆101Updated 3 months ago
- This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.☆62Updated 2 months ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆91Updated 3 years ago
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 6 years ago
- ☆85Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆26Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last week
- Statistical analysis for sparse high-throughput sequencing☆69Updated 6 months ago
- Statistics and visualization for amplicon data☆70Updated 2 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 4 years ago
- Microbial ecological network visualization clustering☆120Updated 3 months ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated 3 months ago
- ☆75Updated last year