biobakery / Maaslin2Links
MaAsLin2: Microbiome Multivariate Association with Linear Models
☆145Updated 10 months ago
Alternatives and similar repositories for Maaslin2
Users that are interested in Maaslin2 are comparing it to the libraries listed below
Sorting:
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆117Updated 3 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆120Updated last year
- A companion R package for the MicrobiomeAnalyst web server☆126Updated last week
- Curated Metagenomic Data of the Human Microbiome☆140Updated 2 months ago
- ☆84Updated last year
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆115Updated 2 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆161Updated 2 weeks ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆128Updated last month
- ☆56Updated last year
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆63Updated 3 years ago
- A comprehensive R package for deep mining microbiome☆190Updated 2 months ago
- Make Picrust2 Output Analysis and Visualization Easier☆156Updated this week
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆35Updated 2 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆115Updated last year
- Orchestrating Microbiome Analysis☆101Updated this week
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆156Updated last year
- Network construction, analysis, and comparison for microbial compositional data☆170Updated 6 months ago
- Rapid and scalable correlation estimation for compositional data☆92Updated last year
- Course material for the metagenomics course☆44Updated 3 years ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆58Updated 3 months ago
- Metatranscriptomics Tutorial☆63Updated 2 years ago
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 6 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆211Updated last week
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆119Updated last month
- R implementation of the LEfSe method☆59Updated 4 months ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 9 months ago
- Import qiime2 artifacts to R☆173Updated 9 months ago
- Generating iToL annotations from Spreadsheet or CSV files☆104Updated 5 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆124Updated 2 weeks ago