MaAsLin2: Microbiome Multivariate Association with Linear Models
☆153Feb 5, 2026Updated 8 months ago
Alternatives and similar repositories for Maaslin2
Users that are interested in Maaslin2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆87Sep 15, 2026Updated 3 weeks ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆139Aug 6, 2026Updated 2 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆425Sep 10, 2026Updated last month
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆253Updated this week
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆233Mar 24, 2026Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R package for microbiome biomarker discovery☆199Feb 19, 2025Updated last year
- bioBakery tools for meta'omic profiling☆325Aug 4, 2026Updated 2 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆170Jun 10, 2026Updated 4 months ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆154Sep 29, 2026Updated 2 weeks ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆144Sep 18, 2026Updated 3 weeks ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆342Updated this week
- ☆30Aug 2, 2026Updated 2 months ago
- Read alignment statistics for metagenomics☆406Sep 23, 2026Updated 3 weeks ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆128Jul 28, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆92May 22, 2024Updated 2 years ago
- Variational autoencoder for metagenomic binning☆333Apr 27, 2026Updated 5 months ago
- An R package for downstream data analysis of microbiome omics data☆292Sep 30, 2026Updated 2 weeks ago
- Orchestrating Microbiome Analysis☆112Sep 28, 2026Updated 2 weeks ago
- strain-level analysis tools☆40Oct 21, 2024Updated last year
- Rapid comparison and dereplication of genomes☆358Updated this week
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- Woltka: a versatile meta'omic data classifier☆80Sep 8, 2025Updated last year
- Bioinformatics program inStrain☆192Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pipeline for metabolic annotation of microbial genomes☆154Mar 20, 2025Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆60Feb 7, 2026Updated 8 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆358Mar 16, 2026Updated 6 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆478Updated this week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆325Updated this week
- Code, unit tests, and tutorials for running PICRUSt2☆396Sep 25, 2026Updated 2 weeks ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆170Apr 23, 2025Updated last year
- R implementation of the LEfSe method☆68May 14, 2026Updated 4 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆186Jul 17, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Toolbox for comparative genomics of MAGs☆93Jul 30, 2026Updated 2 months ago
- METAgenomic LONgitudinal Differential Abundance method☆15Dec 17, 2019Updated 6 years ago
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆188Mar 17, 2026Updated 6 months ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆234Aug 12, 2026Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆686Updated this week
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago