Alternatives and similar repositories for Maaslin2

Users that are interested in Maaslin2 are comparing it to the libraries listed below

• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆130Updated 3 months ago
• xia-lab / MicrobiomeAnalystR
  A companion R package for the MicrobiomeAnalyst web server
  ☆131Updated last week
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆190Updated 2 months ago
• SegataLab / lefse
  ☆87Updated last year
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆169Updated 4 months ago
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆178Updated 2 weeks ago
• waldronlab / curatedMetagenomicData
  Curated Metagenomic Data of the Human Microbiome
  ☆149Updated this week
• biobakery / kneaddata
  Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
  ☆142Updated last month
• microsud / Tools-Microbiome-Analysis
  A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
  ☆117Updated 2 years ago
• jbisanz / qiime2R
  Import qiime2 artifacts to R
  ☆175Updated last year
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆123Updated last year
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆129Updated 4 months ago
• microbiome / OMA
  Orchestrating Microbiome Analysis
  ☆106Updated this week
• nearinj / Comparison_of_DA_microbiome_methods
  ☆58Updated last year
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆123Updated 5 months ago
• FrederickHuangLin / ANCOM-Code-Archive
  Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…
  ☆61Updated 3 years ago
• stefpeschel / NetCoMi
  Network construction, analysis, and comparison for microbial compositional data
  ☆172Updated last month
• donovan-h-parks / STAMP
  Statistical Analysis of Metagenomic Profiles
  ☆94Updated this week
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆36Updated 2 years ago
• karkman / MetagenomeCourse2019
  Course material for the metagenomics course
  ☆47Updated 3 years ago
• scwatts / fastspar
  Rapid and scalable correlation estimation for compositional data
  ☆97Updated last year
• microbiota / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆20Updated 6 years ago
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆231Updated this week
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆117Updated last month
• yiluheihei / microbiomeMarker
  R package for microbiome biomarker discovery
  ☆193Updated 11 months ago
• cozygene / FEAST
  Fast expectation maximization for microbial source tracking
  ☆137Updated last year
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆100Updated 4 years ago
• GRONINGEN-MICROBIOME-CENTRE / Groningen-Microbiome
  Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…
  ☆59Updated 7 months ago
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆63Updated 2 months ago
• YongxinLiu / Liu2020ProteinCell
  Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome
  ☆44Updated 5 years ago