Alternatives and similar repositories for ANCOM-Code-Archive:

Users that are interested in ANCOM-Code-Archive are comparing it to the libraries listed below

• Russel88 / DAtest
  Compare different differential abundance and expression methods
  ☆50Updated 2 years ago
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆53Updated last week
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆70Updated 2 years ago
• ChiLiubio / file2meco
  Transform files to the microtable object with microeco package
  ☆24Updated last month
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆53Updated last week
• victoriapascal / gutsmash
  gutSMASH
  ☆54Updated 3 weeks ago
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆27Updated 6 months ago
• nearinj / Comparison_of_DA_microbiome_methods
  ☆55Updated 10 months ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆69Updated last month
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆27Updated last year
• knightlab-analyses / reference-frames
  ☆20Updated 4 years ago
• karkman / MetagenomeCourse2019
  Course material for the metagenomics course
  ☆43Updated 2 years ago
• lch14forever / microbiomeViz
  Visualize microbiome data with black magic ggtree
  ☆68Updated 4 years ago
• benjjneb / LRASManuscript
  Reproducible Analyses accompanying DADA2 + PacBio Manuscript
  ☆31Updated 4 years ago
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆112Updated last week
• microbiota / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆19Updated 5 years ago
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆41Updated 7 months ago
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆27Updated 2 years ago
• YongxinLiu / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆31Updated 3 months ago
• danknights / sourcetracker
  ☆70Updated last year
• statdivlab / radEmu
  ☆51Updated this week
• microUCPH / amplicon_data_analysis
  Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project
  ☆11Updated 2 years ago
• FrederickHuangLin / ANCOM-BC-Code-Archive
  Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …
  ☆30Updated 4 years ago
• microsud / dysbiosisR
  The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures
  ☆14Updated 2 years ago
• cafferychen777 / MicrobiomeStat
  Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
  ☆36Updated this week
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 2 years ago
• mestaki / qiime2-to-BugBase
  ☆12Updated 3 years ago
• YongxinLiu / Zhang2018SCLS
  Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)
  ☆32Updated 5 years ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆54Updated 2 years ago