Network construction, analysis, and comparison for microbial compositional data
☆177Dec 18, 2025Updated 4 months ago
Alternatives and similar repositories for NetCoMi
Users that are interested in NetCoMi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆230Apr 7, 2026Updated 3 weeks ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23Jun 27, 2022Updated 3 years ago
- Implementation of CoNet in R☆16Oct 16, 2019Updated 6 years ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆92Oct 9, 2025Updated 6 months ago
- An R package for downstream data analysis of microbiome omics data☆277Apr 26, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆133Apr 27, 2026Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆257Mar 20, 2025Updated last year
- Bioinformatics program inStrain☆184Mar 12, 2026Updated last month
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆260Jul 27, 2024Updated last year
- A comprehensive R package for deep mining microbiome☆192Updated this week
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- R package for microbiome biomarker discovery☆197Feb 19, 2025Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆301Feb 3, 2026Updated 3 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆332Apr 20, 2026Updated 2 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- motus - a tool for marker gene-based OTU (mOTU) profiling☆172Mar 13, 2026Updated last month
- Import qiime2 artifacts to R☆179Dec 12, 2024Updated last year
- microbiome R package☆316Aug 19, 2025Updated 8 months ago
- ☆20Jun 8, 2020Updated 5 years ago
- Improvement of metagenome-assembled genomes☆58Mar 17, 2020Updated 6 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 10 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆56Updated this week
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Updated this week
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆229Apr 1, 2026Updated last month
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- Orchestrating Microbiome Analysis☆108Apr 20, 2026Updated 2 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆249Oct 12, 2025Updated 6 months ago
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated 3 weeks ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆72Dec 1, 2025Updated 5 months ago
- Statistical analysis for sparse high-throughput sequencing☆72Dec 17, 2024Updated last year
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆94Oct 1, 2025Updated 7 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆225Mar 24, 2026Updated last month
- Normalized Stochasticity Ratio in community assembly☆31Oct 22, 2024Updated last year
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆127Mar 30, 2026Updated last month
- ☆15Oct 14, 2023Updated 2 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆25Nov 2, 2025Updated 6 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆244Updated this week