stefpeschel / NetCoMi
Network construction, analysis, and comparison for microbial compositional data
☆158Updated last month
Alternatives and similar repositories for NetCoMi:
Users that are interested in NetCoMi are comparing it to the libraries listed below
- Import qiime2 artifacts to R☆161Updated last month
- R package for microbiome biomarker discovery☆171Updated last year
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆112Updated last week
- Make Picrust2 Output Analysis and Visualization Easier☆117Updated 3 weeks ago
- An R package for data analysis in microbial community ecology☆216Updated last week
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆108Updated 2 weeks ago
- A comprehensive R package for deep mining microbiome☆183Updated 2 months ago
- Microbial ecological network visualization clustering☆102Updated 9 months ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆203Updated last year
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆112Updated last year
- Statistics and visualization for amplicon data☆70Updated last year
- Fast expectation maximization for microbial source tracking☆121Updated 8 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆150Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆104Updated 4 months ago
- A companion R package for the MicrobiomeAnalyst web server☆119Updated 3 weeks ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆59Updated 2 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆130Updated 2 months ago
- Orchestrating Microbiome Analysis☆89Updated this week
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆70Updated 2 weeks ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- An R package for microbial community analysis in an environmental context☆66Updated 4 years ago
- Various functions for analysis of microbial community data☆42Updated 2 years ago
- ☆79Updated 7 months ago
- ☆12Updated 2 years ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆90Updated 2 years ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆45Updated 3 years ago
- ☆11Updated 5 years ago
- FUNGuild: parsing OTUs into functional guilds☆107Updated 8 months ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago