stefpeschel / NetCoMiLinks
Network construction, analysis, and comparison for microbial compositional data
☆171Updated 8 months ago
Alternatives and similar repositories for NetCoMi
Users that are interested in NetCoMi are comparing it to the libraries listed below
Sorting:
- Import qiime2 artifacts to R☆173Updated 11 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆126Updated 2 months ago
- R package for microbiome biomarker discovery☆191Updated 9 months ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆122Updated 3 months ago
- A comprehensive R package for deep mining microbiome☆190Updated 2 weeks ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆116Updated 2 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆221Updated 3 weeks ago
- Microbial ecological network visualization clustering☆132Updated 8 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆165Updated 2 months ago
- Make Picrust2 Output Analysis and Visualization Easier☆169Updated last week
- Orchestrating Microbiome Analysis☆105Updated 2 weeks ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆150Updated last year
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆62Updated 3 years ago
- Statistics and visualization for amplicon data☆72Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- R implementation of the LEfSe method☆61Updated this week
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- An R package for data analysis in microbial community ecology☆253Updated last week
- FUNGuild: parsing OTUs into functional guilds☆123Updated last year
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆121Updated last year
- Fast expectation maximization for microbial source tracking☆133Updated last year
- R scripts for performing co-occurrence analyses☆35Updated 10 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆32Updated last year
- A companion R package for the MicrobiomeAnalyst web server☆127Updated last week
- ☆20Updated 5 years ago
- Transform files to the microtable object with microeco package☆28Updated 2 weeks ago
- ☆85Updated last year
- ☆78Updated last year
- Microbial co-occurrence network inferred from Earth Microbiome Project☆26Updated 5 years ago