Alternatives and similar repositories for microbiomeMarker

Users that are interested in microbiomeMarker are comparing it to the libraries listed below

• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆133Updated this week
• stefpeschel / NetCoMi
  Network construction, analysis, and comparison for microbial compositional data
  ☆166Updated last month
• ChiLiubio / microeco
  An R package for data analysis in microbial community ecology
  ☆230Updated this week
• jbisanz / qiime2R
  Import qiime2 artifacts to R
  ☆170Updated 5 months ago
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆122Updated 2 months ago
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆112Updated 2 months ago
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆114Updated last month
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆187Updated last month
• microsud / Tools-Microbiome-Analysis
  A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
  ☆115Updated 2 years ago
• xia-lab / MicrobiomeAnalystR
  A companion R package for the MicrobiomeAnalyst web server
  ☆123Updated last week
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆70Updated 2 years ago
• biobakery / Maaslin2
  MaAsLin2: Microbiome Multivariate Association with Linear Models
  ☆137Updated 6 months ago
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆58Updated 3 weeks ago
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆170Updated this week
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆157Updated 2 years ago
• microbiome / microbiome
  microbiome R package
  ☆299Updated 5 months ago
• SegataLab / lefse
  ☆84Updated 11 months ago
• Mengting-Maggie-Yuan / warming-network-complexity-stability
  Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"
  ☆48Updated 3 years ago
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆106Updated last month
• picrust / picrust
  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…
  ☆89Updated 2 years ago
• lch14forever / microbiomeViz
  Visualize microbiome data with black magic ggtree
  ☆68Updated 4 years ago
• showteeth / ggcoverage
  Visualize and annotate genomic coverage with ggplot2
  ☆259Updated 3 months ago
• fjossandon / Tax4Fun2
  ☆15Updated 2 years ago
• YongxinLiu / Amplicon2017
  Data and scripts for amplicon pipeline
  ☆25Updated 6 years ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆71Updated 2 years ago
• cozygene / FEAST
  Fast expectation maximization for microbial source tracking
  ☆123Updated last year
• UMNFuN / FUNGuild
  FUNGuild: parsing OTUs into functional guilds
  ☆117Updated last year
• YongxinLiu / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆31Updated 7 months ago
• FrederickHuangLin / ANCOM-Code-Archive
  Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…
  ☆62Updated 2 years ago
• taowenmicro / EasyStat
  EasyStat
  ☆17Updated 3 years ago