R package for microbiome biomarker discovery
☆193Feb 19, 2025Updated last year
Alternatives and similar repositories for microbiomeMarker
Users that are interested in microbiomeMarker are comparing it to the libraries listed below
Sorting:
- A comprehensive R package for deep mining microbiome☆191Nov 3, 2025Updated 4 months ago
- R implementation of the LEfSe method☆63Nov 17, 2025Updated 3 months ago
- An R package for data analysis in microbial community ecology☆270Updated this week
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆152Feb 5, 2026Updated last month
- microbiome R package☆313Aug 19, 2025Updated 6 months ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆117Apr 11, 2023Updated 2 years ago
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- Microbial ecological network visualization clustering☆144Nov 20, 2025Updated 3 months ago
- A shiny package for microbiome functional enrichment analysis☆38Dec 23, 2025Updated 2 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆126May 12, 2024Updated last year
- Ying's tools for analysis, with particular focus on microbiome data☆41Jan 27, 2026Updated last month
- microbiome data simulation package☆22Oct 2, 2025Updated 5 months ago
- Orchestrating Microbiome Analysis☆107Feb 16, 2026Updated 2 weeks ago
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated 11 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆131Sep 5, 2025Updated 6 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆169Sep 4, 2025Updated 6 months ago
- Network construction, analysis, and comparison for microbial compositional data☆176Dec 18, 2025Updated 2 months ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Sep 1, 2022Updated 3 years ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆457Feb 13, 2026Updated 3 weeks ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆129Oct 20, 2025Updated 4 months ago
- Code, unit tests, and tutorials for running PICRUSt2☆381Nov 27, 2025Updated 3 months ago
- A complete pipeline for metagenomic analysis☆440Updated this week
- bioBakery tools for meta'omic profiling☆307Jun 3, 2025Updated 9 months ago
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated last year
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆122Feb 27, 2026Updated last week
- Import qiime2 artifacts to R☆176Dec 12, 2024Updated last year
- A companion R package for the MicrobiomeAnalyst web server☆131Feb 22, 2026Updated last week
- Rapid comparison and dereplication of genomes☆327Nov 10, 2025Updated 3 months ago
- ☆58Mar 14, 2024Updated last year
- Make Picrust2 Output Analysis and Visualization Easier☆185Feb 12, 2026Updated 3 weeks ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆229Oct 29, 2025Updated 4 months ago
- Statistical analysis for sparse high-throughput sequencing☆71Dec 17, 2024Updated last year
- Interpretation and visualization of microbiome charts☆534Jul 22, 2025Updated 7 months ago
- ☆42Nov 20, 2017Updated 8 years ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆642Feb 27, 2026Updated last week
- Using R language in microbiome analysis☆349May 10, 2023Updated 2 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆32Oct 19, 2020Updated 5 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 3 years ago