R package for microbiome biomarker discovery
☆200Feb 19, 2025Updated last year
Alternatives and similar repositories for microbiomeMarker
Users that are interested in microbiomeMarker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A comprehensive R package for deep mining microbiome☆195Apr 29, 2026Updated 2 months ago
- R implementation of the LEfSe method☆67May 14, 2026Updated last month
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆155Feb 5, 2026Updated 5 months ago
- An R package for downstream data analysis of microbiome omics data☆281Jun 29, 2026Updated last week
- microbiome R package☆318May 12, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Microbial ecological network visualization clustering☆153Nov 20, 2025Updated 7 months ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- A companion R package for the MicrobiomeAnalyst web server☆133Jun 25, 2026Updated last week
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆127May 12, 2024Updated 2 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆171Sep 4, 2025Updated 10 months ago
- microbiome data simulation package☆22Oct 2, 2025Updated 9 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Orchestrating Microbiome Analysis☆109Jun 22, 2026Updated 2 weeks ago
- A shiny package for microbiome functional enrichment analysis☆42Updated this week
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆459Feb 13, 2026Updated 4 months ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆139Apr 22, 2026Updated 2 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆74Sep 1, 2022Updated 3 years ago
- ☆44Nov 20, 2017Updated 8 years ago
- bioBakery tools for meta'omic profiling☆319Jun 24, 2026Updated last week
- Network construction, analysis, and comparison for microbial compositional data☆181Jun 28, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆57Mar 14, 2024Updated 2 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆138Apr 27, 2026Updated 2 months ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆129Jun 1, 2026Updated last month
- Code, unit tests, and tutorials for running PICRUSt2☆393Nov 27, 2025Updated 7 months ago
- Interpretation and visualization of microbiome charts☆548Jul 22, 2025Updated 11 months ago
- Import qiime2 artifacts to R☆183Dec 12, 2024Updated last year
- A complete pipeline for metagenomic analysis☆446Jun 29, 2026Updated last week
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆651Feb 27, 2026Updated 4 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆40May 20, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Using R language in microbiome analysis☆359May 10, 2023Updated 3 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Jun 3, 2026Updated last month
- Make Picrust2 Output Analysis and Visualization Easier☆198Updated this week
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆35Oct 19, 2020Updated 5 years ago
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆60Updated this week
- Rapid comparison and dereplication of genomes☆348Updated this week
- Statistical analysis for sparse high-throughput sequencing☆74Dec 17, 2024Updated last year