quadram-institute-bioscience / dadaist2View external linksLinks
Dadaist2 π¨ Highway to R
β13Mar 7, 2025Updated 11 months ago
Alternatives and similar repositories for dadaist2
Users that are interested in dadaist2 are comparing it to the libraries listed below
Sorting:
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assembliesβ12Jun 30, 2023Updated 2 years ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipelineβ15Dec 14, 2024Updated last year
- Maximum Likelihood Amplicon Pipelineβ22May 22, 2024Updated last year
- An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional dataβ20Apr 18, 2022Updated 3 years ago
- Raspir, the rare species identifierβ11Oct 19, 2023Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.β55Jun 14, 2025Updated 8 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphsβ24Jan 29, 2023Updated 3 years ago
- Woltka: a versatile meta'omic data classifierβ76Sep 8, 2025Updated 5 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulationsβ12Mar 5, 2018Updated 7 years ago
- frame-shift correction for long-read (meta)genomicsβ33Dec 11, 2023Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductorβ30May 1, 2025Updated 9 months ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experimentβ20Nov 12, 2025Updated 3 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio readsβ64Jan 22, 2026Updated 3 weeks ago
- tidyMicro GitHup Repositoryβ21Nov 17, 2021Updated 4 years ago
- β19Jan 16, 2024Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisationβ41Nov 18, 2025Updated 2 months ago
- β11Apr 5, 2021Updated 4 years ago
- A comprehensive and customizable R package for microbiome analysis.β23Aug 10, 2025Updated 6 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphsβ46Jan 27, 2026Updated 2 weeks ago
- Precise host read removalβ115Sep 4, 2025Updated 5 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.β186Feb 6, 2026Updated last week
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) onβ¦β12May 22, 2024Updated last year
- Functions to manipulate and visualize microbial community dataβ13Feb 5, 2026Updated last week
- Antimicrobial Resistance Analysisβ10Jun 11, 2024Updated last year
- tree-aggregated compositional analysis for high-throughput sequencing dataβ10Aug 24, 2022Updated 3 years ago
- Identifying misassemblies via deep learningβ11May 1, 2024Updated last year
- accessory functions for processing microbial community dataβ12Dec 24, 2022Updated 3 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogeneticsβ11Oct 29, 2020Updated 5 years ago
- Feature Aggregate Depth Utilityβ12Aug 20, 2024Updated last year
- An R package to perform systematic quality checks on comparative genomics analysesβ12Jan 12, 2024Updated 2 years ago
- MAGinator - Accurate SNV calling and profiling of MAGsβ26May 21, 2025Updated 8 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and meβ¦β24Feb 6, 2023Updated 3 years ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomiβ¦β67Mar 12, 2025Updated 11 months ago
- Various functions for analysis of microbial community dataβ47Oct 1, 2025Updated 4 months ago
- Remove human reads from a sequencing runβ47Dec 16, 2025Updated 2 months ago
- A taxonomic classifier for shotgun metagenomics readsβ11Apr 4, 2025Updated 10 months ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samplesβ12May 19, 2021Updated 4 years ago
- C++ tools for NCBI taxonomy tasksβ12Jun 26, 2025Updated 7 months ago
- Strain Resolution ON Graphsβ50Jul 18, 2023Updated 2 years ago