quadram-institute-bioscience / dadaist2
Dadaist2 🟨 Highway to R
☆13Updated 2 weeks ago
Alternatives and similar repositories for dadaist2:
Users that are interested in dadaist2 are comparing it to the libraries listed below
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 8 months ago
- ☆22Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- MAG Circularization Method☆33Updated 2 years ago
- scripts for microbiome analysis☆11Updated 7 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 8 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆12Updated last year
- MAGScoT - a MAG scoring and refinement tool☆32Updated 5 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆11Updated last year
- http://huttenhower.sph.harvard.edu/waafle☆11Updated 3 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆31Updated 7 months ago
- ☆13Updated 7 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Bacterial taxonomy construction and evaluation in R☆13Updated last year
- A functional profiler for metagenomes using FracMinHash☆16Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 2 years ago
- Hybrid Assembler for Plasmids☆10Updated 2 years ago
- Download assembly files from NCBI☆12Updated last year
- Metabolic scanning and annotation of Metagenomes☆10Updated last week
- ☆25Updated last year
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Calculate assocations between genes and traits☆23Updated 2 weeks ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated last month
- ☆10Updated 3 years ago