quadram-institute-bioscience / dadaist2Links
Dadaist2 π¨ Highway to R
β13Updated 5 months ago
Alternatives and similar repositories for dadaist2
Users that are interested in dadaist2 are comparing it to the libraries listed below
Sorting:
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGsβ24Updated last year
- pipeline for read mapping, snp calling and annotation for bacterial genomesβ12Updated last year
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.β15Updated 3 years ago
- π π« Trim, circularise and orient long read bacterial genome assembliesβ26Updated 5 years ago
- MAGScoT - a MAG scoring and refinement toolβ35Updated 9 months ago
- β‘οΈπ§¬ FastMLST: A multi-core tool for multilocus sequence typing of draft genome assembliesβ27Updated 5 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphsβ25Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.β20Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigsβ28Updated 2 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insightsβ14Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)β22Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and meβ¦β23Updated 2 years ago
- MAG Circularization Methodβ33Updated 3 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samplesβ13Updated 4 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performanceβ22Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigsβ32Updated 11 months ago
- A functional profiler for metagenomes using FracMinHashβ16Updated 3 weeks ago
- Bacterial GWAS analysisβ43Updated 2 weeks ago
- β25Updated 6 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)β39Updated 11 months ago
- scripts for microbiome analysisβ11Updated last year
- β22Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genomeβ41Updated 5 years ago
- Neptune: Genomic Signature Discoveryβ20Updated 8 months ago
- frame-shift correction for long-read (meta)genomicsβ34Updated last year
- Tools for extracting individual genomes from metagenomesβ17Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancyβ15Updated 5 years ago
- Working with the outputs of sourmash in Rβ28Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenomeβ49Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strainsβ46Updated 2 years ago