Dadaist2 π¨ Highway to R
β13Mar 7, 2025Updated last year
Alternatives and similar repositories for dadaist2
Users that are interested in dadaist2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- accessory functions for processing microbial community dataβ12Dec 24, 2022Updated 3 years ago
- Snakemake pipeline for amplicon sequencing using dada2β10Jul 17, 2023Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.β54Jun 14, 2025Updated last year
- An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional dataβ19Apr 18, 2022Updated 4 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assembliesβ14Jun 30, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Woltka: a versatile meta'omic data classifierβ81Sep 8, 2025Updated last year
- Maximum Likelihood Amplicon Pipelineβ22Aug 31, 2026Updated 3 weeks ago
- Raspir, the rare species identifierβ11Oct 19, 2023Updated 2 years ago
- Functions to manipulate and visualize microbial community dataβ14May 29, 2026Updated 3 months ago
- frame-shift correction for long-read (meta)genomicsβ33Dec 11, 2023Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphsβ25Jan 29, 2023Updated 3 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) onβ¦β12May 22, 2024Updated 2 years ago
- Functions to manipulate and visualize microbial community dataβ12Sep 15, 2023Updated 3 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulationsβ12Mar 5, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio readsβ66Jan 22, 2026Updated 8 months ago
- A comprehensive and customizable R package for microbiome analysis.β24Sep 6, 2026Updated 3 weeks ago
- Various functions for analysis of microbial community dataβ48Apr 15, 2026Updated 5 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β34Nov 12, 2020Updated 5 years ago
- Identifying misassemblies via deep learningβ11May 1, 2024Updated 2 years ago
- R shiny app for interactive microbiome analysisβ55Sep 18, 2026Updated last week
- Strain Resolution ON Graphsβ51Jul 18, 2023Updated 3 years ago
- tree-aggregated compositional analysis for high-throughput sequencing dataβ12Aug 24, 2022Updated 4 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experimentβ20Nov 12, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- MAGinator - Accurate SNV calling and profiling of MAGsβ28Mar 23, 2026Updated 6 months ago
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscriptβ¦β28Sep 8, 2026Updated 2 weeks ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-β¦β42Sep 16, 2026Updated last week
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.β208Jun 10, 2026Updated 3 months ago
- mGEMS Genomic epidemiology with mixed samplesβ17Sep 4, 2024Updated 2 years ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipelineβ16Mar 4, 2026Updated 6 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searchingβ222Apr 24, 2026Updated 5 months ago
- Bayesian Inferential Regression for Differential Microbiome Analysisβ25Jun 5, 2026Updated 3 months ago
- ALDEx_bioc is the working directory for updating bioconductorβ32Mar 27, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Differential abundance (DA) and correlation analyses for microbial absolute abundance dataβ144Sep 18, 2026Updated last week
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and meβ¦β29Feb 6, 2023Updated 3 years ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.β187Sep 9, 2026Updated 2 weeks ago
- Remove human reads from a sequencing runβ54Jun 29, 2026Updated 2 months ago
- Fasten toolkit, for streaming operations on fastq filesβ86Sep 10, 2026Updated 2 weeks ago
- SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualizβ¦β13Feb 5, 2025Updated last year
- Public repository for cFMD - curatedFoodMetagenomicDataβ39Jun 18, 2026Updated 3 months ago