Make Picrust2 Output Analysis and Visualization Easier
☆195May 10, 2026Updated 2 weeks ago
Alternatives and similar repositories for ggpicrust2
Users that are interested in ggpicrust2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code, unit tests, and tutorials for running PICRUSt2☆388Nov 27, 2025Updated 5 months ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆49Apr 20, 2026Updated last month
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆83May 13, 2026Updated last week
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆134Apr 27, 2026Updated 3 weeks ago
- A comprehensive R package for deep mining microbiome☆194Apr 29, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R package for microbiome biomarker discovery☆197Feb 19, 2025Updated last year
- An R package for downstream data analysis of microbiome omics data☆278Updated this week
- ☆23May 16, 2020Updated 6 years ago
- R implementation of the LEfSe method☆66May 14, 2026Updated last week
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆20Jul 26, 2024Updated last year
- Orchestrating Microbiome Analysis☆109Updated this week
- Transform files to the microtable object with microeco package☆28Feb 13, 2026Updated 3 months ago
- User-Friendly R Package for Supervised Machine Learning Pipelines☆64Nov 3, 2025Updated 6 months ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆33Oct 1, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Do microbiome analysis with dada2 and phyloseq object☆15Oct 9, 2024Updated last year
- An R package to visualize high-throughput sequencing data.☆12Nov 18, 2019Updated 6 years ago
- Import qiime2 artifacts to R☆180Dec 12, 2024Updated last year
- A short tutorial for Tax4Fun2☆26Aug 24, 2024Updated last year
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆17Mar 5, 2026Updated 2 months ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆99Jul 12, 2024Updated last year
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆231Apr 29, 2026Updated 3 weeks ago
- Network construction, analysis, and comparison for microbial compositional data☆179Dec 18, 2025Updated 5 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆170Sep 4, 2025Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R package for downstream Microbiome analysis☆31Dec 10, 2024Updated last year
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆247Updated this week
- ☆43Nov 20, 2017Updated 8 years ago
- microbiome R package☆316May 12, 2026Updated last week
- Using R language in microbiome analysis☆355May 10, 2023Updated 3 years ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆649Feb 27, 2026Updated 2 months ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Mar 16, 2026Updated 2 months ago
- Microbial ecological network visualization clustering☆149Nov 20, 2025Updated 6 months ago
- Look Up Guild Information for Fungi in R☆23Mar 20, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆65Apr 14, 2026Updated last month
- ☆13Aug 13, 2024Updated last year
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Oct 23, 2018Updated 7 years ago
- Read alignment statistics for metagenomics☆397Apr 8, 2026Updated last month
- REference Sequence annotation and CuRatIon Pipeline☆99Updated this week
- ☆13Feb 22, 2022Updated 4 years ago