Import qiime2 artifacts to R
☆183Dec 12, 2024Updated last year
Alternatives and similar repositories for qiime2R
Users that are interested in qiime2R are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for visualising microbial community amplicon data☆73Nov 3, 2025Updated 8 months ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆651Feb 27, 2026Updated 4 months ago
- Code, unit tests, and tutorials for running PICRUSt2☆393Nov 27, 2025Updated 7 months ago
- REference Sequence annotation and CuRatIon Pipeline☆101Jun 3, 2026Updated last month
- ☆15Mar 14, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- An R package for downstream data analysis of microbiome omics data☆283Updated this week
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆252Updated this week
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆33Oct 1, 2024Updated last year
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 6 months ago
- microbiome R package☆318May 12, 2026Updated last month
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆138Apr 27, 2026Updated 2 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆171Sep 4, 2025Updated 10 months ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A comprehensive R package for deep mining microbiome☆195Apr 29, 2026Updated 2 months ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆100Jul 12, 2024Updated last year
- R package for microbiome biomarker discovery☆200Feb 19, 2025Updated last year
- Accurate sample inference from amplicon data with single nucleotide resolution☆553Feb 13, 2026Updated 4 months ago
- Network construction, analysis, and comparison for microbial compositional data☆181Jun 28, 2026Updated last week
- Microbiome analysis☆57Jun 18, 2026Updated 3 weeks ago
- Microbiota Analysis in R Easily☆12Jul 14, 2022Updated 3 years ago
- Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))☆527Jul 1, 2026Updated last week
- Orchestrating Microbiome Analysis☆109Jun 22, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆21Oct 17, 2023Updated 2 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆232Apr 29, 2026Updated 2 months ago
- A repository for large-scale microbiome datasets, formatted for phyloseq☆41Apr 8, 2024Updated 2 years ago
- R implementation of the LEfSe method☆67May 14, 2026Updated last month
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data☆144Apr 10, 2026Updated 2 months ago
- Using R language in microbiome analysis☆359May 10, 2023Updated 3 years ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- A shiny package for microbiome functional enrichment analysis☆42Jul 1, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A companion R package for the MicrobiomeAnalyst web server☆133Updated this week
- Make Picrust2 Output Analysis and Visualization Easier☆198Jun 30, 2026Updated last week
- ☆44Nov 20, 2017Updated 8 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 4 years ago
- A Python package for microbiome sequencing analysis with QIIME 2☆47Jan 28, 2024Updated 2 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 6 years ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆459Feb 13, 2026Updated 4 months ago