jbisanz / qiime2R
Import qiime2 artifacts to R
☆168Updated 3 months ago
Alternatives and similar repositories for qiime2R:
Users that are interested in qiime2R are comparing it to the libraries listed below
- R package for microbiome biomarker discovery☆177Updated last month
- Make Picrust2 Output Analysis and Visualization Easier☆125Updated last month
- Network construction, analysis, and comparison for microbial compositional data☆163Updated this week
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆114Updated 2 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆120Updated this week
- A comprehensive R package for deep mining microbiome☆184Updated 4 months ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆113Updated last year
- A companion R package for the MicrobiomeAnalyst web server☆122Updated this week
- An R package for data analysis in microbial community ecology☆219Updated this week
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆153Updated 2 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆135Updated 4 months ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆90Updated 2 years ago
- Microbial ecological network visualization clustering☆104Updated this week
- Statistics and visualization for amplicon data☆71Updated last year
- microbiome R package☆294Updated 3 months ago
- ☆85Updated 10 months ago
- FUNGuild: parsing OTUs into functional guilds☆113Updated 10 months ago
- Analyzing and visualizing KEGG information using the grammar of graphics☆225Updated last month
- Visualize and annotate genomic coverage with ggplot2☆256Updated last month
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Updated 2 years ago
- Visualize microbiome data with black magic ggtree☆67Updated 4 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆207Updated last year
- Helper Functions for Interactive Tree Of Life (iTOL)☆168Updated 3 months ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆110Updated last month
- R implementation of the LEfSe method☆56Updated last month
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆87Updated 8 months ago
- Fast expectation maximization for microbial source tracking☆123Updated 10 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆195Updated last week
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆74Updated last month