Import qiime2 artifacts to R
☆185Dec 12, 2024Updated last year
Alternatives and similar repositories for qiime2R
Users that are interested in qiime2R are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code, unit tests, and tutorials for running PICRUSt2☆401Oct 24, 2026Updated 2 weeks ago
- Tools for visualising microbial community amplicon data☆74Nov 3, 2025Updated last year
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆652Feb 27, 2026Updated 8 months ago
- REference Sequence annotation and CuRatIon Pipeline☆103Updated this week
- microbiome R package☆320Oct 24, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Mar 14, 2023Updated 3 years ago
- An R package for downstream data analysis of microbiome omics data☆295Oct 20, 2026Updated 2 weeks ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆102Jul 12, 2024Updated 2 years ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 9 months ago
- R package for microbiome biomarker discovery☆199Feb 19, 2025Updated last year
- Speedy versions of phyloseq functions☆50Apr 21, 2024Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆265Updated this week
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆144Sep 18, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 4 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆234Updated this week
- Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))☆533Updated this week
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆89Oct 19, 2026Updated 2 weeks ago
- A comprehensive R package for deep mining microbiome☆196Apr 29, 2026Updated 6 months ago
- Network construction, analysis, and comparison for microbial compositional data☆180Jul 7, 2026Updated 4 months ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆35Oct 1, 2024Updated 2 years ago
- Orchestrating Microbiome Analysis☆113Updated this week
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆175Sep 4, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Microbiome analysis☆59Updated this week
- Accurate sample inference from amplicon data with single nucleotide resolution☆562Jul 31, 2026Updated 3 months ago
- ☆44Nov 20, 2017Updated 8 years ago
- Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data☆149Jul 17, 2026Updated 3 months ago
- Microbiota Analysis in R Easily☆12Jul 14, 2022Updated 4 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆21Oct 17, 2023Updated 3 years ago
- A companion R package for the MicrobiomeAnalyst web server☆132Updated this week
- Make Picrust2 Output Analysis and Visualization Easier☆207Updated this week
- 🍄 Qiime2 ITS classifiers for the UNITE database☆56Oct 26, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R implementation of the LEfSe method☆68Updated this week
- Using R language in microbiome analysis☆363May 10, 2023Updated 3 years ago
- A Python package for microbiome sequencing analysis with QIIME 2☆46Jan 28, 2024Updated 2 years ago
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio☆15Updated this week
- Microbial ecological network visualization clustering☆156Sep 29, 2026Updated last month
- bioBakery tools for meta'omic profiling☆328Updated this week