The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
☆227Nov 25, 2022Updated 3 years ago
Alternatives and similar repositories for KAT
Users that are interested in KAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- k-mer based assembly evaluation☆343Updated this week
- Fast and frugal disk based k-mer counter☆333May 8, 2026Updated 2 weeks ago
- A fast multi-threaded k-mer counter☆539Mar 20, 2024Updated 2 years ago
- Fast genome analysis from unassembled short reads☆320Apr 8, 2024Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆564Feb 14, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Yet another k-mer analyzer☆172Dec 30, 2025Updated 4 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆212Aug 21, 2024Updated last year
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆178Apr 22, 2026Updated last month
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- An accurate GFF3/GTF lift over pipeline☆539Aug 1, 2023Updated 2 years ago
- ☆286Dec 29, 2025Updated 4 months ago
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆294Feb 25, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Synteny and Rearrangement Identifier☆468Updated this week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated 2 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 7 years ago
- haplotypic duplication identification tool☆286Oct 30, 2025Updated 6 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆166Jul 4, 2025Updated 10 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆210Nov 18, 2022Updated 3 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆215May 12, 2026Updated 2 weeks ago
- ☆275Jun 26, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Chromosome-level scaffolding using multiple references☆167Sep 8, 2024Updated last year
- A fast approximate aligner for long DNA sequences☆288Oct 11, 2024Updated last year
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- A library for running k-mers based GWAS☆125Oct 29, 2024Updated last year
- Genome assembly evaluation tool☆510Nov 14, 2024Updated last year
- Sequence-to-graph mapper and graph generator☆478Aug 11, 2025Updated 9 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆249Updated this week
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆250Dec 16, 2025Updated 5 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆391Apr 22, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pangenome-based genome inference☆169May 7, 2026Updated 2 weeks ago
- Laboratory Information Management System☆37Oct 30, 2020Updated 5 years ago
- Reference-free profiling of polyploid genomes☆145Oct 2, 2025Updated 7 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆851May 2, 2026Updated 3 weeks ago
- software tools for haplotype assembly from sequence data☆231Feb 9, 2025Updated last year
- Long read / genome alignment software☆317Dec 16, 2025Updated 5 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆309Mar 18, 2024Updated 2 years ago