fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
☆865May 2, 2026Updated 2 months ago
Alternatives and similar repositories for mosdepth
Users that are interested in mosdepth are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Plot structural variant signals from many BAMs and CRAMs☆571Jul 13, 2024Updated 2 years ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 10 months ago
- The next version of bwa-mem☆852Oct 15, 2025Updated 9 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- Structural variation caller using third generation sequencing☆672Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆329Updated this week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,219May 19, 2026Updated 2 months ago
- Toolset for SV simulation, comparison and filtering☆424Dec 1, 2023Updated 2 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆406Jun 16, 2026Updated last month
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆338May 27, 2025Updated last year
- Jasmine: SV Merging Across Samples☆256Dec 20, 2024Updated last year
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 3 months ago
- Bayesian haplotype-based mutation calling☆324Feb 13, 2026Updated 5 months ago
- genetic variant expressions, annotation, and filtering for great good.☆277May 12, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- nim wrapper for htslib for parsing genomics data files☆158May 2, 2026Updated 2 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆286May 21, 2025Updated last year
- Structural variant toolkit for VCFs☆420May 22, 2026Updated last month
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,400Jul 10, 2026Updated last week
- Structural variant and indel caller for mapped sequencing data☆468Oct 11, 2025Updated 9 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis