voichek / kmersGWASLinks
A library for running k-mers based GWAS
☆124Updated last year
Alternatives and similar repositories for kmersGWAS
Users that are interested in kmersGWAS are comparing it to the libraries listed below
Sorting:
- A set of functions to visualise genotypes based on a VCF☆88Updated 3 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆101Updated 3 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆94Updated 2 years ago
- SMC++ infers population history from whole-genome sequence data.☆171Updated 2 years ago
- Haplotype based scans for selection☆138Updated 2 weeks ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆102Updated 4 months ago
- ☆100Updated 4 years ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆118Updated 4 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆120Updated 2 years ago
- Version 5 of the CAFE phylogenetics software☆158Updated 11 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆105Updated 7 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated 2 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆112Updated 4 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆85Updated 4 years ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆182Updated 2 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆109Updated last week
- Reference-free profiling of polyploid genomes☆139Updated 3 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆103Updated 2 months ago
- Scripts for analysis used during the course☆93Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆191Updated 8 months ago
- NLR-Annotator upload☆76Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆87Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆116Updated 6 months ago
- ☆231Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆178Updated last year
- source code for EVM☆122Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆202Updated last year
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆37Updated 4 years ago