voichek / kmersGWASLinks
A library for running k-mers based GWAS
☆122Updated last year
Alternatives and similar repositories for kmersGWAS
Users that are interested in kmersGWAS are comparing it to the libraries listed below
Sorting:
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆101Updated 3 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆92Updated last year
- Haplotype based scans for selection☆137Updated last month
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆100Updated 3 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆120Updated 2 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆108Updated 3 weeks ago
- SMC++ infers population history from whole-genome sequence data.☆168Updated last year
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆112Updated 3 months ago
- ☆95Updated 4 years ago
- Version 5 of the CAFE phylogenetics software☆155Updated 10 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆101Updated last month
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆105Updated 6 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆118Updated 4 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- Software for painlessly estimating average nucleotide diversity within and between populations☆148Updated last month
- NLR-Annotator upload☆75Updated 2 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆111Updated 5 months ago
- Reference-free profiling of polyploid genomes☆136Updated 2 months ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆180Updated last month
- A pipeline used to identify different modes of duplicated gene pairs☆116Updated 4 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆201Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆145Updated 5 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 7 months ago
- Scripts for analysis used during the course☆93Updated last year
- Constructing a pangenome gene graph☆200Updated 4 months ago