Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation
☆114Mar 5, 2026Updated last month
Alternatives and similar repositories for vadr
Users that are interested in vadr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated last month
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆253Mar 17, 2026Updated 3 weeks ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Nov 8, 2023Updated 2 years ago
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆54Jul 24, 2025Updated 8 months ago
- VAPiD: Viral Annotation and Identification Pipeline☆56May 29, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Reference-based consensus creation☆60Apr 1, 2026Updated last week
- ☆38Jan 12, 2026Updated 2 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- a tool for designing primer panels for multiplex PCR.☆107Feb 5, 2024Updated 2 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆66Updated this week
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆148Mar 4, 2026Updated last month
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago
- Ultrafast Sample Placement on Existing Trees☆139Feb 6, 2026Updated 2 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- snipit: summarise snps relative to your reference sequence☆168Jan 13, 2026Updated 2 months ago
- ☆21Feb 12, 2026Updated last month
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆135Apr 2, 2026Updated last week
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Jul 29, 2021Updated 4 years ago
- VIGOR4☆21Aug 15, 2025Updated 7 months ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 3 years ago
- UPHL's Reference Free Pipeline☆28Apr 1, 2026Updated last week
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆38Updated this week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆79Sep 10, 2025Updated 7 months ago
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated last year
- Variant call verification☆16May 12, 2025Updated 10 months ago
- The ARTIC fieldbioinformatics pipeline☆131Apr 2, 2026Updated last week
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Jun 14, 2022Updated 3 years ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆41Feb 26, 2026Updated last month
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated last year
- rapidly rid reads of horrid humans☆15Dec 2, 2021Updated 4 years ago
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 6 months ago
- A tool for exploring large trees in the browser☆131Mar 31, 2026Updated last week
- Rapid determination of appropriate reference genomes.☆101Jan 22, 2025Updated last year
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆347Apr 12, 2023Updated 2 years ago