esteinig / vircov
Viral genome coverage evaluation for metagenomic diagnostics
☆28Updated this week
Related projects ⓘ
Alternatives and complementary repositories for vircov
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- TAXnomic Profile Aggregation and STAndardisation☆34Updated 3 weeks ago
- Drug Resistance Prediction with Reference Graphs☆19Updated last year
- Remove human reads from a sequencing run☆24Updated last month
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 5 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆37Updated this week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆41Updated 4 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆17Updated 2 weeks ago
- Find Unique genomic Regions☆29Updated this week
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated this week
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆19Updated 4 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆21Updated last year
- transposable element typing pipeline☆16Updated 8 months ago
- strain-level analysis tools☆33Updated last month
- Microbial agile accurate SNP Typer☆29Updated 10 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆40Updated 3 weeks ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆29Updated 3 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 7 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆25Updated 3 months ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆11Updated 7 months ago
- MAGScoT - a MAG scoring and refinement tool☆28Updated last month
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆20Updated 3 weeks ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last week