DrMicrobit / mira
MIRA sequence assembler
☆28Updated 2 months ago
Alternatives and similar repositories for mira:
Users that are interested in mira are comparing it to the libraries listed below
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Find Unique genomic Regions☆29Updated last week
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- a broadly applicable tool for automated gene identification and retrieval☆30Updated 3 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 6 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last month
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- ☆20Updated 2 years ago
- ☆25Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- ☆32Updated 4 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- ☆26Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using referen…☆13Updated 4 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 3 years ago
- Generate unique KMERs for every contig in a FASTA file☆47Updated 2 years ago
- Strain Resolution ON Graphs☆47Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- genomic alignment similarity search tool☆18Updated 9 months ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆31Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago