DrMicrobit / miraLinks
MIRA sequence assembler
☆31Updated last year
Alternatives and similar repositories for mira
Users that are interested in mira are comparing it to the libraries listed below
Sorting:
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last week
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 2 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Strain Resolution ON Graphs☆50Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated last week
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆46Updated last week
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Ancient microbiome snakemake workflow☆27Updated 9 months ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 4 years ago
- Generate unique KMERs for every contig in a FASTA file☆49Updated 3 years ago
- ☆43Updated last year
- Pangenome analysis of eukaryotes.☆21Updated 5 years ago
- Scalable creating/updating of metagenome profiling databases☆63Updated 7 months ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- Graph-based assembly phasing☆90Updated 2 months ago
- ☆20Updated 3 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆32Updated 6 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆43Updated 5 months ago
- ☆29Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Updated 5 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 3 weeks ago
- Influenza genome analysis Nextflow workflow☆31Updated 4 months ago