Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size
☆12Sep 30, 2025Updated 9 months ago
Alternatives and similar repositories for backmap
Users that are interested in backmap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆18Apr 4, 2026Updated 3 months ago
- A script for comparing old vs new versions of genome annotations☆24Aug 1, 2023Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆23Mar 8, 2024Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆254Jun 20, 2026Updated last month
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- ☆15Mar 20, 2023Updated 3 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆22Apr 20, 2023Updated 3 years ago
- Plasmid exploration of bacterial genomes☆26Mar 2, 2022Updated 4 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆26Jul 10, 2026Updated last week
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 11 years ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 5 years ago
- chloroplast genome assembly using long reads data☆17Jul 8, 2025Updated last year
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated last year
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 4 years ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 4 years ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated 4 months ago
- ☆11Sep 16, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆28Mar 25, 2023Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆34Updated this week
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆12Apr 27, 2026Updated 2 months ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆18Dec 29, 2022Updated 3 years ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆67Apr 30, 2026Updated 2 months ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆22Oct 28, 2025Updated 8 months ago
- Download assembly files from NCBI☆13May 9, 2023Updated 3 years ago
- Hierarchical genome assembly: de novo bacterial genome assembly using high coverage short sequencing reads☆11Dec 27, 2016Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago
- some useful scripts for working with genomics and sequencing data☆18Oct 31, 2019Updated 6 years ago
- Just Annotate My Genome☆19May 21, 2026Updated 2 months ago
- Find and visualize rearrangements in DNA sequences☆55Jun 3, 2026Updated last month
- Plasmid and antimicrobial resistance pipeline☆16Apr 30, 2026Updated 2 months ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆28May 7, 2026Updated 2 months ago
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 6 years ago