schellt / backmap
Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size
☆11Updated 3 years ago
Alternatives and similar repositories for backmap:
Users that are interested in backmap are comparing it to the libraries listed below
- Generate basic stats for an assembly.☆11Updated 2 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆9Updated 3 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆15Updated 2 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 7 months ago
- Quickly get coverage statistics given reads and an assembly☆13Updated 11 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- ☆19Updated last year
- Genome alignment and synteny plots☆30Updated last year
- ☆23Updated 8 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- transposable element typing pipeline☆17Updated last year
- software to identify primers that can distinguish genomes☆21Updated 3 months ago
- Better Alignments with Translated HMMER☆19Updated this week
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Updated 9 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 5 months ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year
- A script for comparing old vs new versions of genome annotations☆20Updated last year
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 9 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆17Updated 2 years ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 5 years ago
- ☆17Updated this week
- A Swiss-Army-Knife for Bioinformaticians☆12Updated last month
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year
- Statistical analysis of gene family evolution using phylogenetic birth-death processes and WGD inference using rjMCMC☆9Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago