schellt / backmap
Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size
☆10Updated 3 years ago
Alternatives and similar repositories for backmap:
Users that are interested in backmap are comparing it to the libraries listed below
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Updated 8 months ago
- ☆19Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆21Updated 2 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆9Updated 3 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated 11 months ago
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- metagenome population recombination rate estimation pipeline☆12Updated this week
- profile the repeat landscape in a genome☆15Updated 10 years ago
- ☆13Updated last year
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆15Updated 2 years ago
- use paired-end transcriptome reads to scaffold genomes☆10Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- ☆22Updated 6 months ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 3 months ago
- ☆11Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated 2 weeks ago
- Scaffolding with assembly likelihood optimization☆20Updated 4 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year
- Genome alignment and synteny plots☆28Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 6 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated last year
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated 11 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 5 months ago
- ☆15Updated 3 weeks ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 3 months ago