Alternatives and similar repositories for backmap

Users that are interested in backmap are comparing it to the libraries listed below

• uio-bmi / NucBreak
  Location of structural errors in a genome assembly and structural variations between a pair of genomes
  ☆11Updated 5 years ago
• moshi4 / plot_genome_align_fig
  Plot genome alignment figure using progressiveMauve & genoPlotR
  ☆22Updated 2 years ago
• alguoo314 / JASPER
  This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)
  ☆12Updated 11 months ago
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆17Updated 6 years ago
• janka2012 / digIS
  Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes
  ☆10Updated 3 years ago
• SR-Martin / alvis
  ☆20Updated last year
• laxeye / zga
  ZGA prokaryotic genome assembly and annotation pipeline
  ☆12Updated 8 months ago
• ThomasDOtto / ILRA
  Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…
  ☆13Updated 6 months ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆22Updated 4 years ago
• at-cg / RAFT
  ☆23Updated 9 months ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated 2 years ago
• moshi4 / FastDTLmapper
  Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
  ☆15Updated 2 years ago
• husonlab / phylosketch2
  Sketch phylogenetic trees and networks
  ☆16Updated 2 weeks ago
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆21Updated 2 weeks ago
• kammoji / gapFinisher
  A reliable gap filling pipeline for draft genomes
  ☆11Updated 5 years ago
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆18Updated 2 years ago
• institut-de-genomique / HAPO-G
  Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.
  ☆25Updated last year
• isugifNF / polishCLR
  A nextflow pipeline for polishing CLR assemblies
  ☆17Updated 2 years ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆26Updated 3 months ago
• gtrichard / mummer-ggplot
  Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.
  ☆11Updated 4 years ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated 11 months ago
• CAFS-bioinformatics / P_RNA_scaffolder
  use paired-end transcriptome reads to scaffold genomes
  ☆11Updated 6 years ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated 3 months ago
• Adamtaranto / blast-besties
  Rapid discovery of reciprocal best blast pairs.
  ☆10Updated 6 months ago
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆19Updated 5 years ago
• erinyoung / roundabout
  Finding regions of similarity between plasmids
  ☆16Updated 2 years ago
• beardymcjohnface / Koverage
  Quickly get coverage statistics given reads and an assembly
  ☆13Updated last year
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated 3 weeks ago
• ERGA-consortium / pipelines
  ☆16Updated this week
• mcsimenc / PhyLTR
  Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
  ☆17Updated 2 years ago