jas-preet / SPOT-1D-LMLinks
SPOT-1D-LM: Reaching Alignment-profile-based Accuracy in Predicting Protein Secondary and Tertiary Structural Properties without Alignment.
☆11Updated last year
Alternatives and similar repositories for SPOT-1D-LM
Users that are interested in SPOT-1D-LM are comparing it to the libraries listed below
Sorting:
- NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction☆23Updated 2 years ago
- The DSSP building software☆47Updated 2 years ago
- Fast and accurate protein structure prediction☆56Updated 9 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆37Updated 2 months ago
- ML toolset for creating TED: The Encyclopedia of Domains☆24Updated 5 months ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- predict stability change upon mutation☆28Updated last year
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆24Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 7 months ago
- Predict protein thermostability with ML☆19Updated last year
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆33Updated 4 years ago
- Alignment-free structure prediction using protein language models☆22Updated 2 years ago
- ☆43Updated last year
- Fast and accurate prediction of coiled coil domains in protein sequences. ☆24Updated last year
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆11Updated last year
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Updated 4 years ago
- Direct coupling analysis software for protein and RNA sequences☆53Updated 3 months ago
- Graph Network for protein-protein interface including language model features☆32Updated last year
- Insights into the inner workings of transformer models for protein function prediction☆14Updated last year
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Updated last year
- ☆36Updated 9 months ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆35Updated 2 months ago
- ☆15Updated 5 years ago
- Machine learning prediction of enzyme optimum pH☆47Updated 6 months ago
- ☆30Updated last year
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆15Updated 9 months ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 5 years ago
- Detection of remote homology by comparison of protein language model representations☆56Updated 10 months ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year