bpucker / KIPEsLinks
Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.
☆16Updated 4 months ago
Alternatives and similar repositories for KIPEs
Users that are interested in KIPEs are comparing it to the libraries listed below
Sorting:
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆39Updated 5 months ago
- ☆32Updated last year
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆27Updated 3 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 9 months ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 6 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- ☆20Updated 3 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Computational Analysis of Gene Expression Evolution☆43Updated last week
- An R package to infer and analyze synteny networks from protein sequences☆30Updated last month
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Updated last month
- Multi-genome synteny block visualization tool☆43Updated 7 months ago
- Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.☆27Updated last week
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆13Updated 2 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- ☆18Updated 3 years ago
- Synteny Mapping and Analysis Program☆27Updated 2 weeks ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Updated 2 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆21Updated 2 weeks ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Genome-Genome circle synteny☆25Updated last year
- ☆20Updated last year
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆12Updated 7 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 5 months ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆23Updated 4 months ago