bpucker / KIPEs
Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.
☆13Updated 2 months ago
Related projects: ⓘ
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- Dinoflagellate Annotation Workflow☆11Updated last year
- Yet another Hi-C scaffolding tool☆19Updated last year
- Add multiple thread function for genome comparison☆15Updated 2 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆16Updated last month
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆29Updated last week
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆28Updated 5 months ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆32Updated last year
- This is the standalone version of the EviAnn pipeline☆15Updated 2 weeks ago
- Convergent substitution detection tool based on the PCOC model☆28Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆23Updated 3 months ago
- ☆29Updated 3 weeks ago
- Improved Phased Assembler☆27Updated 2 years ago
- ☆15Updated 7 months ago
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆26Updated 4 months ago
- Computational Analysis of Gene Expression Evolution☆34Updated this week
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 2 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- An R package to infer and analyze synteny networks from protein sequences☆21Updated 5 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 7 months ago
- deep learning gene finder☆22Updated last week
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆24Updated 3 months ago
- Genome-Genome circle synteny☆22Updated 9 months ago
- Quality control plotting for long reads☆10Updated 4 months ago
- ☆32Updated 3 years ago
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆26Updated 2 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆16Updated 4 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆19Updated last year
- ☆19Updated last month