uio-bmi / NucBreakLinks
Location of structural errors in a genome assembly and structural variations between a pair of genomes
☆11Updated 6 years ago
Alternatives and similar repositories for NucBreak
Users that are interested in NucBreak are comparing it to the libraries listed below
Sorting:
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- ☆16Updated 7 years ago
- ☆20Updated 2 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- Generating UTRs from SHort Reads☆12Updated 5 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 9 months ago
- Prefix-renaming FASTA records really fast.☆16Updated last year
- Better Alignments with Translated HMMER☆24Updated this week
- profile the repeat landscape in a genome☆16Updated 11 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- ☆29Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Updated last year
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Updated last month
- Phasing reads with secondary alignments☆21Updated last year
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago
- FastK based version of Merqury☆29Updated 2 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- ☆26Updated 4 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- The MafFilter genome alignment processor☆19Updated this week
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago