uio-bmi / NucBreakLinks
Location of structural errors in a genome assembly and structural variations between a pair of genomes
☆11Updated 6 years ago
Alternatives and similar repositories for NucBreak
Users that are interested in NucBreak are comparing it to the libraries listed below
Sorting:
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Generating UTRs from SHort Reads☆12Updated 5 years ago
- Extracts subgraphs or components from a graph in GFA format☆25Updated 11 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 8 months ago
- ☆16Updated 7 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- recompute GFA link overlaps☆25Updated 3 years ago
- ☆28Updated last year
- Consensus genome annotation using OMA☆27Updated 4 months ago
- A comparative genome scaffolding tool☆16Updated 7 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated 2 weeks ago
- Convert HAL to VG☆22Updated last year
- FastK based version of Merqury☆28Updated last month
- profile the repeat landscape in a genome☆16Updated 11 years ago
- ☆20Updated last year
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- Prefix-renaming FASTA records really fast.☆16Updated last year
- Rapid discovery of reciprocal best blast pairs.☆10Updated last year
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆17Updated 2 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 3 years ago