uio-bmi / NucBreakLinks
Location of structural errors in a genome assembly and structural variations between a pair of genomes
☆11Updated 5 years ago
Alternatives and similar repositories for NucBreak
Users that are interested in NucBreak are comparing it to the libraries listed below
Sorting:
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- ☆15Updated 7 years ago
- profile the repeat landscape in a genome☆16Updated 10 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- Prefix-renaming FASTA records really fast.☆17Updated 11 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 5 years ago
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 6 months ago
- ☆23Updated 9 months ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 11 months ago
- ☆20Updated last year
- Better Alignments with Translated HMMER☆21Updated this week
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 3 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 6 months ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Visualising discordant reads☆15Updated 9 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 5 months ago
- Implementation of ToL genome assembly workflows☆20Updated this week
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago