LKremer / showTreeLinks
showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
☆30Updated 6 years ago
Alternatives and similar repositories for showTree
Users that are interested in showTree are comparing it to the libraries listed below
Sorting:
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 5 months ago
- MIRA sequence assembler☆29Updated 7 months ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 8 months ago
- Synteny Mapping and Analysis Program☆27Updated 2 weeks ago
- A dotplot generator for large chromosomes☆42Updated last year
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆23Updated 3 months ago
- perSVade: personalized Structural Variation detection☆40Updated 3 weeks ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆23Updated 2 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- MCHelper: An automatic tool to curate transposable element libraries☆37Updated last month
- ☆38Updated last year
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- ☆26Updated 4 years ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆12Updated 6 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated 2 weeks ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago
- Complete assemblies of non-human primate genomes☆50Updated 2 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- collection of bioinformatic scripts☆31Updated last year
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆23Updated 2 years ago
- A program for detection of tRNA genes☆64Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆58Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆78Updated last month
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated 7 months ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆25Updated 7 years ago
- A Nextflow pipeline for evaluating assembly quality☆37Updated 2 weeks ago