LKremer / showTreeLinks
showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
☆30Updated 6 years ago
Alternatives and similar repositories for showTree
Users that are interested in showTree are comparing it to the libraries listed below
Sorting:
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆29Updated last year
- perSVade: personalized Structural Variation detection☆39Updated 3 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- MIRA sequence assembler☆29Updated 5 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆34Updated 3 months ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 5 months ago
- ☆20Updated 9 months ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated 2 years ago
- orthology assignment using phylogenetic and network analyses☆45Updated 3 months ago
- MCHelper: An automatic tool to curate transposable element libraries☆36Updated last month
- ☆20Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆22Updated 7 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated 2 years ago
- ☆26Updated 4 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Documentation for Evolview☆28Updated 3 years ago
- Yet another Hi-C scaffolding tool☆19Updated 7 months ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- A Nextflow pipeline for evaluating assembly quality☆34Updated last week
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆29Updated last month
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.