LKremer / showTreeLinks
showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
☆31Updated 6 years ago
Alternatives and similar repositories for showTree
Users that are interested in showTree are comparing it to the libraries listed below
Sorting:
- MIRA sequence assembler☆29Updated 7 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 5 months ago
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 5 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆23Updated 2 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 9 months ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- Synteny Mapping and Analysis Program☆27Updated last week
- ☆27Updated 5 years ago
- A program for detection of tRNA genes☆67Updated 2 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- A dotplot generator for large chromosomes☆42Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- A package to annotate protein sequences☆60Updated 6 months ago
- ☆26Updated 4 years ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated last month
- ☆42Updated last year
- A Nextflow pipeline for evaluating assembly quality☆37Updated last week
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated last year
- ☆38Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆79Updated last week
- AncestralClust☆11Updated last month
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆12Updated 7 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- MCHelper: An automatic tool to curate transposable element libraries☆37Updated last month