LKremer / showTreeLinks
showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
☆32Updated 6 years ago
Alternatives and similar repositories for showTree
Users that are interested in showTree are comparing it to the libraries listed below
Sorting:
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated this week
- MIRA sequence assembler☆28Updated 8 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 5 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 9 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆24Updated 3 months ago
- Synteny Mapping and Analysis Program☆27Updated 2 weeks ago
- A program for detection of tRNA genes☆67Updated 2 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- ☆26Updated 4 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated last week
- An R package to infer and analyze synteny networks from protein sequences☆30Updated last month
- MFannot is a program for the annotation of mitochondrial and plastid genomes☆22Updated last year
- ☆38Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- A dotplot generator for large chromosomes☆43Updated last year
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆11Updated 7 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 9 months ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆79Updated last month
- ☆41Updated last year
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- Computational Analysis of Gene Expression Evolution☆43Updated last month
- convert various features into a GFF-like file for use in genome browsers☆72Updated 2 months ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆25Updated 7 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆58Updated last year
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆35Updated 8 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- A package to annotate protein sequences☆59Updated 6 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated last year