Alternatives and similar repositories for msa-af2-nf

Users that are interested in msa-af2-nf are comparing it to the libraries listed below

• bodenlab / GRASP
  Graphical Representation of Ancestral Sequence Predictions
  ☆12Updated 2 years ago
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆20Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆29Updated 2 years ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆42Updated last year
• jnoms / vpSAT
  Virus Protein Structural Analysis Toolkit
  ☆14Updated last year
• Legana / ampir
  antimicrobial peptide prediction in R
  ☆33Updated last year
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆25Updated 2 weeks ago
• Zsailer / pyasr
  Ancestral Sequence Reconstruction in Python
  ☆14Updated 6 years ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• issararab / EPSAPG
  EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST
  ☆11Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆27Updated 4 months ago
• GCA-VH-lab / uorf4u
  uorf4u is a bioinformatics tool for conserved upstream ORF annotation.
  ☆13Updated 4 months ago
• Maize-Genetics-and-Genomics-Database / FASSO
  FASSO: Functional Annotations using Sequence and Structure Orthology
  ☆10Updated 3 years ago
• konstin / knn-for-homology
  Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"
  ☆13Updated 2 years ago
• Rcoppee / CONSTRUCT
  Finding patch of conserved amino acid sites in 3D structure
  ☆13Updated 9 months ago
• fhlab / UMIC-seq
  Nanopore UMI-linked consensus sequencing
  ☆16Updated 4 years ago
• amaurypm / pseqsid
  Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
  ☆18Updated last year
• minmarg / comer2
  Fast, sensitive and accurate protein remote homology search on GPUs
  ☆16Updated last year
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆23Updated 8 months ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆30Updated 9 months ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆27Updated 2 years ago
• msternke / protein-consensus-sequence
  A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence
  ☆18Updated 3 years ago
• BioinformaticsToolsmith / MeShClust2
  MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
  ☆15Updated 4 years ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆37Updated 2 weeks ago
• infernet-h2020 / DCAlign
  ☆11Updated last year
• esbgkannan / kibby
  A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
  ☆17Updated 2 years ago
• tlawrence3 / amPEPpy
  ☆29Updated 2 years ago
• TurakhiaLab / TWILIGHT
  High throughput tool for tall and wide multiple sequence alignment.
  ☆24Updated 2 weeks ago
• liudan111 / EvoMIL
  Prediction of virus-host association using protein language models and multiple instance learning
  ☆21Updated last year
• mourisl / MSAplot
  Plot multiple sequence alignment (MSA)
  ☆16Updated last year