Alternatives and similar repositories for msa-af2-nf:

Users that are interested in msa-af2-nf are comparing it to the libraries listed below

• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆19Updated 8 months ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆14Updated 2 months ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• corydunnlab / SequenceBouncer
  A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).
  ☆9Updated last month
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆19Updated last year
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆37Updated 8 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆28Updated last year
• Zsailer / pyasr
  Ancestral Sequence Reconstruction in Python
  ☆13Updated 5 years ago
• TattaBio / OMG
  ☆31Updated 7 months ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆32Updated 2 weeks ago
• tlawrence3 / amPEPpy
  ☆24Updated last year
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆23Updated 2 weeks ago
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated last year
• steineggerlab / unicore
  Universal and efficient core gene phylogeny with Foldseek and ProstT5
  ☆53Updated last week
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated last year
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• minmarg / comer2
  Fast, sensitive and accurate protein remote homology search on GPUs
  ☆15Updated 10 months ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆19Updated 4 months ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated last year
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆37Updated 3 months ago
• mourisl / MSAplot
  Plot multiple sequence alignment (MSA)
  ☆14Updated 5 months ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆24Updated last year
• vicruiser / 3Dmapper
  Map genetic variants and protein positions to protein interfaces in 3D
  ☆13Updated last year
• Gaius-Augustus / learnMSA
  Learning and Aligning Large Protein Families with support of protein language models.
  ☆21Updated last week
• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆9Updated 2 years ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆55Updated 4 years ago
• JudeWells / chainsaw
  ☆32Updated 5 months ago
• GCA-VH-lab / uorf4u
  uorf4u is a bioinformatics tool for conserved upstream ORF annotation.
  ☆13Updated last month
• althonos / pymuscle5
  Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
  ☆20Updated 10 months ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆25Updated 2 weeks ago