GouXiangJian / SSRMMD
SSRMMD: A Rapid and Accurate Algorithm for Mining SSR Feature Loci and Candidate Polymorphic SSRs Based on Assembled Sequences.
☆14Updated 4 years ago
Alternatives and similar repositories for SSRMMD:
Users that are interested in SSRMMD are comparing it to the libraries listed below
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- ☆23Updated last year
- ☆21Updated 6 years ago
- Build haplotye and generate figures☆18Updated 3 years ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆13Updated 6 months ago
- ☆21Updated 2 years ago
- ☆12Updated 3 years ago
- ☆16Updated 3 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- ☆15Updated last year
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 10 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 3 years ago
- ☆12Updated 5 months ago
- Scripts for NGS processing☆17Updated 7 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- A tool for performing collinearity-incorporating homology inference☆28Updated last year
- scripts☆15Updated 6 years ago
- Scripts to convert between file formats for various analyses☆15Updated last week
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 2 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- A haplotype analysis toolkit for natural variation study.☆29Updated last year
- ☆21Updated 5 years ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆22Updated 4 months ago
- ☆15Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆38Updated last year
- Pipelines and scripts for analysing RNA-seq,genome and other sequecing data.☆9Updated 5 years ago
- repository for code used in analysis of open wild wheat consortium☆15Updated 3 years ago
- Whole Genome Annotation Pipeline☆15Updated 11 months ago