GouXiangJian / SSRMMD
SSRMMD: A Rapid and Accurate Algorithm for Mining SSR Feature Loci and Candidate Polymorphic SSRs Based on Assembled Sequences.
☆13Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for SSRMMD
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- Build haplotye and generate figures☆17Updated 2 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated last month
- ☆13Updated 3 weeks ago
- ☆22Updated last year
- A haplotype analysis toolkit for natural variation study.☆27Updated last year
- Dynamic Elongation of a Genome Assembly Path☆15Updated 6 months ago
- Phylogenetic iDentification of Subgenomes☆10Updated 2 years ago
- The tools are used for displaying hic signal of genome☆22Updated 3 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆16Updated 5 years ago
- Scripts to convert between file formats for various analyses☆14Updated 2 months ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆11Updated 3 months ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆17Updated 3 months ago
- ☆16Updated 2 years ago
- ☆11Updated 2 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆14Updated 10 months ago
- ☆14Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆21Updated last year
- ☆12Updated 3 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆21Updated 2 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆23Updated 6 months ago
- scripts☆15Updated 6 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆11Updated last month
- Robust identification of orthologous synteny with the Orthology Index☆11Updated 2 weeks ago
- ☆20Updated 8 months ago
- Reconstruction of ancestral genome maps☆16Updated 6 years ago
- Deleterious mutation prediction pipeline☆14Updated 10 months ago
- ☆14Updated 2 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆13Updated last month
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format☆27Updated last month