GouXiangJian / SSRMMDLinks
SSRMMD: A Rapid and Accurate Algorithm for Mining SSR Feature Loci and Candidate Polymorphic SSRs Based on Assembled Sequences.
☆15Updated 4 years ago
Alternatives and similar repositories for SSRMMD
Users that are interested in SSRMMD are comparing it to the libraries listed below
Sorting:
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated 11 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆17Updated 6 years ago
- ☆27Updated 2 years ago
- Scripts to convert between file formats for various analyses☆17Updated 3 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 4 months ago
- Draw genetic map (linkage map) in R☆12Updated 7 years ago
- DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.☆19Updated last year
- Build haplotye and generate figures☆18Updated 3 years ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆14Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆43Updated 2 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- Deleterious mutation prediction pipeline☆13Updated 7 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- ☆14Updated last year
- ☆21Updated 5 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- ☆15Updated 9 months ago
- Detecting NUMTs from WGS☆12Updated last year
- ☆22Updated 6 years ago
- Whole Genome Annotation Pipeline☆17Updated last month
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆9Updated 2 months ago
- ☆27Updated 7 months ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Sorting and subsampling phylogenomic datasets☆25Updated 4 months ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- Full GATK SNP calling pipeline☆21Updated 2 years ago
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆13Updated 4 years ago