GouXiangJian / SSRMMDLinks
SSRMMD: A Rapid and Accurate Algorithm for Mining SSR Feature Loci and Candidate Polymorphic SSRs Based on Assembled Sequences.
☆16Updated 5 years ago
Alternatives and similar repositories for SSRMMD
Users that are interested in SSRMMD are comparing it to the libraries listed below
Sorting:
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Full GATK SNP calling pipeline☆22Updated 2 years ago
- ☆29Updated 2 years ago
- Scripts to convert between file formats for various analyses☆16Updated 5 months ago
- A haplotype analysis toolkit for natural variation study.☆30Updated 2 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated last year
- Build haplotye and generate figures☆18Updated 3 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 7 months ago
- Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- ge…☆25Updated 2 years ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆15Updated 3 weeks ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 7 years ago
- ☆15Updated last year
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- ☆12Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated 2 years ago
- ☆21Updated 6 years ago
- ☆27Updated 2 months ago
- ☆24Updated last year
- Scripts for NGS processing☆17Updated 8 years ago
- ☆16Updated 2 years ago
- Sorting and subsampling phylogenomic datasets☆26Updated 6 months ago
- ☆22Updated 6 years ago
- Deleterious mutation prediction pipeline☆13Updated 10 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated 10 months ago
- MCMCtree tutorials☆24Updated last year