Alternatives and similar repositories for Syllable-PBWT:

Users that are interested in Syllable-PBWT are comparing it to the libraries listed below

• uio-bmi / pyvg
  Importing vg json graphs to Python data structures.
  ☆10Updated 4 years ago
• jmonlong / pangenome-evaluation
  Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map
  ☆10Updated 3 years ago
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated last year
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 5 years ago
• ekg / wflign
  the we-flyin WFA-guided ultralong tiling sequence aligner
  ☆11Updated 3 years ago
• hubner-lab / GWANN
  ☆12Updated 2 years ago
• luntergroup / polyploid
  Benchmarking variant calling in polyploids
  ☆13Updated 3 years ago
• ComparativeGenomicsToolkit / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆11Updated 5 months ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆12Updated 6 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 11 months ago
• hlilab / hlilab.github.io
  ☆16Updated this week
• edawson / svaha
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆12Updated last year
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 6 months ago
• MoinSebi / gSV
  ☆11Updated 2 years ago
• HKU-BAL / Translocator
  Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…
  ☆13Updated 5 years ago
• mlinderm / npsv
  Non-parametric structural variant genotyper
  ☆15Updated 3 years ago
• chfi / gfainject
  ☆15Updated last year
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 4 years ago
• ekg / splitfa
  split a FASTA sequence file into shorter sequences
  ☆10Updated 4 years ago
• bahlolab / superSTR
  A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.
  ☆18Updated last month
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• langmead-lab / vargas
  ☆25Updated 3 years ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated 2 years ago
• DecodeGenetics / graphtyper-pipelines
  Recommended Graphtyper pipelines
  ☆14Updated 4 years ago
• medvedevgroup / BubbZ
  ☆15Updated 4 years ago
• PalamaraLab / ASMC
  Ascertained Sequentially Markovian Coalescent
  ☆16Updated 5 months ago
• richarddurbin / hash10x
  a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly
  ☆15Updated 5 years ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆19Updated 4 years ago
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 6 months ago