ZhiGroup / Syllable-PBWT
☆9Updated last year
Alternatives and similar repositories for Syllable-PBWT:
Users that are interested in Syllable-PBWT are comparing it to the libraries listed below
- Pan gGnome Viewer☆10Updated 11 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 5 years ago
- Importing vg json graphs to Python data structures.☆10Updated 4 years ago
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 3 years ago
- ☆9Updated 4 years ago
- ☆15Updated this week
- split a FASTA sequence file into shorter sequences☆10Updated 3 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- ☆11Updated 2 years ago
- Non-parametric structural variant genotyper☆15Updated 3 years ago
- Pangenome Graph Variation Format (PGVF)☆18Updated 4 years ago
- ☆25Updated 3 years ago
- ☆16Updated 3 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 3 months ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated 10 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆18Updated 4 years ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 2 years ago
- Unfazed by genomic variant phasing☆26Updated 8 months ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- Benchmarking variant calling in polyploids☆13Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 9 months ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆13Updated 5 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆20Updated 5 years ago
- Functions to compare a SV call sets against a truth set.☆28Updated 9 months ago