MarioniLab / sarlacc
The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clusters reads and produces a consensus sequence for each cluster after multiple sequence alignment.
☆13Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for sarlacc
- ☆18Updated 4 months ago
- End-guided RNA assembler☆15Updated 2 weeks ago
- ☆23Updated 3 years ago
- iread☆23Updated 3 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated 9 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- ☆23Updated 3 months ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆16Updated last year
- RNA-seq analysis scripts☆15Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- isoCirc☆10Updated 11 months ago
- interactive plots for differential expression analysis☆25Updated 2 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆16Updated last year
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆19Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 4 months ago
- ☆18Updated last month
- Two pass alignment for long reads☆20Updated 3 years ago
- Filter and prioritize fusion calls☆20Updated last month
- Predicting TF sequence-specificity similarity with weighted alignments☆12Updated 5 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆13Updated 2 weeks ago
- HOT regions paper☆11Updated 5 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆27Updated 4 years ago
- 📊 An R package of RNA-seq workflow☆15Updated 2 years ago
- ☆21Updated 3 weeks ago
- ☆11Updated 2 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated last year