MarioniLab / sarlaccLinks
The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clusters reads and produces a consensus sequence for each cluster after multiple sequence alignment.
☆13Updated 6 years ago
Alternatives and similar repositories for sarlacc
Users that are interested in sarlacc are comparing it to the libraries listed below
Sorting:
- ☆17Updated 10 months ago
- ☆23Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- End-guided RNA assembler☆15Updated last month
- ☆21Updated last year
- Whole genome workflows☆12Updated 6 months ago
- ☆12Updated 5 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- interactive plots for differential expression analysis☆32Updated 2 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago