MarioniLab / sarlacc
The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clusters reads and produces a consensus sequence for each cluster after multiple sequence alignment.
☆13Updated 6 years ago
Alternatives and similar repositories for sarlacc:
Users that are interested in sarlacc are comparing it to the libraries listed below
- ☆18Updated 7 months ago
- Two pass alignment for long reads☆22Updated 4 years ago
- End-guided RNA assembler☆15Updated 4 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 weeks ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- ☆23Updated 3 years ago
- ☆28Updated 3 months ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated last week
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Filter and prioritize fusion calls☆20Updated 5 months ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆19Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated last year
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆15Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆21Updated 9 months ago
- Comprehensive Human Expressed SequenceS☆16Updated 7 months ago
- R package for DNA methylation analysis☆17Updated 6 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆13Updated 8 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- ☆11Updated 5 months ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated last week
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago