fmfi-compbio / warpstrLinks
Determining tandem repeat lengths using raw nanopore signals.
☆15Updated last year
Alternatives and similar repositories for warpstr
Users that are interested in warpstr are comparing it to the libraries listed below
Sorting:
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆14Updated 2 months ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆19Updated 2 months ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Updated last year
- ☆26Updated 4 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 3 weeks ago
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Updated 2 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- ☆14Updated last year
- A tool for motif annotation and visualization in tandem repeats.☆11Updated 2 months ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 7 months ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Updated 3 years ago
- ☆32Updated 2 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆19Updated last year
- ☆14Updated last year
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- Consensus genome annotation using OMA☆26Updated last month
- Ascertained Sequentially Markovian Coalescent☆16Updated 8 months ago
- Gene copy number prediction from k-mer frequencies☆13Updated last year
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆24Updated 4 months ago
- ULTRA Locates Tandemly Repetitive Areas☆30Updated 3 months ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆14Updated 6 months ago
- Nanopore Real-Time Analysis Tool☆15Updated 11 months ago