fmfi-compbio / warpstrLinks
Determining tandem repeat lengths using raw nanopore signals.
☆15Updated last year
Alternatives and similar repositories for warpstr
Users that are interested in warpstr are comparing it to the libraries listed below
Sorting:
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆18Updated 2 weeks ago
- ☆21Updated 3 months ago
- Analyse RNA feature distributions.☆16Updated 5 months ago
- A method for measuring chromosome-specific telomere length from long reads☆21Updated last year
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 4 years ago
- A tool for motif annotation and visualization in tandem repeats.☆11Updated last week
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆33Updated 6 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 5 months ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Updated 2 years ago
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆17Updated 5 months ago
- ☆14Updated last year
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆9Updated 3 years ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 3 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- convert a blast output to a bed file☆12Updated 9 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 10 months ago
- A scaffold assembling pipeline for stLFR reads.☆15Updated 4 years ago
- ☆9Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Gene copy number prediction from k-mer frequencies☆13Updated 10 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago