Alternatives and similar repositories for warpstr:

Users that are interested in warpstr are comparing it to the libraries listed below

• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated last year
• WGLab / LongReadSum
  ☆17Updated 3 weeks ago
• popitsch / nanopanel2
  Nanopanel2: a somatic variant caller for Nanopore panel sequencing data
  ☆9Updated 3 years ago
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated 11 months ago
• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆16Updated 4 months ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• PengNi / deepsignal2
  ☆28Updated last year
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 3 years ago
• joshidhaivat / QAlign
  ☆9Updated 3 years ago
• zstephens / telogator2
  A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
  ☆15Updated this week
• kolikem / loma
  ☆14Updated last year
• HKU-BAL / SENSV
  A tool to detect structural variant
  ☆18Updated 2 years ago
• mpertea / stringtie2-initial-release
  Transcript assembly and quantification for RNA-Seq
  ☆8Updated 5 years ago
• TravisWheelerLab / ULTRA
  ULTRA Locates Tandemly Repetitive Areas
  ☆27Updated 3 months ago
• yjx1217 / NanoTrans
  An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data
  ☆14Updated 7 months ago
• Psy-Fer / blue-crab
  crab go snap snap
  ☆38Updated last week
• Maggi-Chen / FusionSeeker
  A gene fusion caller for long-read transcriptome sequencing data.
  ☆18Updated 11 months ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆49Updated 5 years ago
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• Janga-Lab / Penguin
  Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data
  ☆13Updated 3 years ago
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆21Updated 11 months ago
• huangnengCSU / NanoSNP
  A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
  ☆21Updated 2 years ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆28Updated 4 months ago
• BGI-Qingdao / SLR-superscaffolder
  A scaffold assembling pipeline for stLFR reads.
  ☆15Updated 4 years ago
• UCSC-nanopore-cgl / margin
  ☆30Updated 2 years ago
• PacificBiosciences / HiFi-somatic-WDL
  Tumor-normal variant calling workflow using HiFi reads
  ☆17Updated 2 months ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆31Updated 6 years ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 4 months ago