fmfi-compbio / warpstrLinks
Determining tandem repeat lengths using raw nanopore signals.
☆15Updated last year
Alternatives and similar repositories for warpstr
Users that are interested in warpstr are comparing it to the libraries listed below
Sorting:
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- ☆14Updated last year
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 4 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- convert a blast output to a bed file☆12Updated 10 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- ☆21Updated 4 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆18Updated last month
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- Transcript assembly and quantification for RNA-Seq☆8Updated 5 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 7 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- ULTRA Locates Tandemly Repetitive Areas☆28Updated last month
- A tool for motif annotation and visualization in tandem repeats.☆11Updated last month
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 6 months ago
- ☆16Updated 5 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆9Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Convert genbank files to a swath of other formats☆18Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆34Updated 6 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago