fmfi-compbio / warpstr
Determining tandem repeat lengths using raw nanopore signals.
☆12Updated last year
Related projects ⓘ
Alternatives and complementary repositories for warpstr
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 8 months ago
- ☆14Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆21Updated last year
- ☆12Updated 3 years ago
- ☆19Updated 3 months ago
- interactive Multi Objective K-mer Analysis☆23Updated last year
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 2 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆12Updated 6 years ago
- A method for measuring chromosome-specific telomere length from long reads☆20Updated 6 months ago
- Analyse RNA feature distributions.☆15Updated 2 weeks ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆15Updated 9 months ago
- Detect and phase minor SNVs from long-read sequencing data☆15Updated 2 years ago
- Tools for merging Tandem Repeat VCF files☆26Updated 2 weeks ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 6 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆19Updated 5 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- SV calling for diploid assemblies☆23Updated 8 months ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆13Updated 3 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆13Updated 4 months ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆19Updated 2 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- A nextflow pipeline for polishing CLR assemblies☆16Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆24Updated 5 months ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆22Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Yet another Hi-C scaffolding tool☆19Updated 3 weeks ago
- ULTRA Locates Tandemly Repetitive Areas☆24Updated 2 months ago