Alternatives and similar repositories for AncestralClust

Users that are interested in AncestralClust are comparing it to the libraries listed below

• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆28Updated 10 months ago
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆32Updated last year
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆31Updated 2 weeks ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆27Updated 4 months ago
• rhysf / Diamond2GO
  Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…
  ☆24Updated last month
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆36Updated 6 months ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆27Updated 2 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆30Updated 4 months ago
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆52Updated last month
• Rowena-h / BUSCOfilter
  A tool to filter BUSCO output into single-copy gene files for phylogenomics
  ☆13Updated last year
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated 10 months ago
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆33Updated 5 years ago
• slimsuite / buscomp
  BUSCOMP: BUSCO Compiler and Comparison tool
  ☆21Updated last year
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆45Updated 5 months ago
• Markusjsommer / TD2
  TD2
  ☆31Updated 2 weeks ago
• kammoji / gapFinisher
  A reliable gap filling pipeline for draft genomes
  ☆11Updated 6 years ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆31Updated 4 years ago
• Gaius-Augustus / GUSHR
  Generating UTRs from SHort Reads
  ☆12Updated 5 years ago
• danny-wilson / genomegaMap
  Within-species genome-wide dN/dS estimation from very many genomes
  ☆22Updated 5 years ago
• merlyescalona / yagcloser
  YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
  ☆12Updated 2 months ago
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆31Updated last year
• QuentinRougemont / LDhat_workflow
  ☆11Updated 10 months ago
• isugifNF / polishCLR
  A nextflow pipeline for polishing CLR assemblies
  ☆18Updated 2 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆33Updated 4 years ago
• Bean061 / ptgaul
  chloroplast genome assembly using long reads data
  ☆14Updated 6 months ago
• TravisWheelerLab / ULTRA
  ULTRA Locates Tandemly Repetitive Areas
  ☆40Updated 3 months ago
• gengit / PosiGene
  ☆26Updated 4 years ago
• EI-CoreBioinformatics / reat
  Robust Eukaryotic Annotation Toolkit
  ☆18Updated 11 months ago