K-mer based classifier for Y-contig identification from Whole Genome Assemblies
☆13Feb 19, 2020Updated 6 years ago
Alternatives and similar repositories for DiscoverY
Users that are interested in DiscoverY are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Jun 7, 2024Updated 2 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- ☆27Jun 8, 2022Updated 4 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Nov 6, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆20Aug 1, 2023Updated 3 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 3 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- ☆32Jun 18, 2026Updated 2 months ago
- ChromBERT: Uncovering Chromatin State Motifs in the Human Genome using a BERT-based Approach☆12Mar 17, 2026Updated 5 months ago
- Genomic signature interpretation tool for DNA double-strand break repair mechanism☆11Oct 8, 2025Updated 10 months ago
- use long sequenced reads to close gaps in assemblies☆39Sep 4, 2018Updated 7 years ago
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- plot genome alignment synteny☆21May 25, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- The MafFilter genome alignment processor☆19Updated this week
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆13Dec 20, 2022Updated 3 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated last year
- ☆16Jul 9, 2026Updated last month
- Clann: Investigation of phylogenomic signal using supertrees☆18Jul 25, 2026Updated last month
- Mitochondrial Genome Assembly☆17Feb 21, 2024Updated 2 years ago
- ☆16Jan 5, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago
- A simple taxonomic tree format using indented plain text☆15Aug 21, 2026Updated last week
- Python-based web scraper for extracting gene summaries from GeneCards.☆12Oct 3, 2024Updated last year
- scripts for a Genetics Map software☆11Jan 7, 2018Updated 8 years ago
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆43Jul 23, 2025Updated last year
- Dynamic Elongation of a Genome Assembly Path☆28Jul 27, 2026Updated last month
- Detection of outlier genes and species in phylogenomics☆19Dec 14, 2025Updated 8 months ago
- Calculate Hybrid Index and Heterozygosity from SNP data☆17Sep 2, 2025Updated 11 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Maximum a posteriori estimate of contamination for ancient samples☆25Aug 6, 2026Updated 3 weeks ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆44Jul 7, 2020Updated 6 years ago
- R package to draw syntenic plots in 3 different styles☆47Feb 2, 2026Updated 6 months ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 4 years ago
- Sex assignment through coverage☆20May 23, 2025Updated last year
- Useful bioinformatic scripts☆60Feb 23, 2026Updated 6 months ago
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 5 years ago