makovalab-psu / DiscoverYLinks
K-mer based classifier for Y-contig identification from Whole Genome Assemblies
☆13Updated 5 years ago
Alternatives and similar repositories for DiscoverY
Users that are interested in DiscoverY are comparing it to the libraries listed below
Sorting:
- Deleterious mutation prediction pipeline☆13Updated 9 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Sex assignment through coverage☆20Updated 4 months ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated last month
- Diploid genome assembly analysis tools☆14Updated last year
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Updated 2 years ago
- Mitochondrial Genome Assembly☆16Updated last year
- Genome Annotation Pipeline☆36Updated last year
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated 11 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆30Updated 3 weeks ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated last year
- Multi-genome synteny block visualization tool☆46Updated 8 months ago
- Genome-wide de novo genotyping with 2bRAD☆23Updated 4 months ago
- ☆33Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Software package for estimating fine-scale recombination rate.☆16Updated 4 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 7 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆23Updated 3 weeks ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- Calculate Hybrid Index and Heterozygosity from SNP data☆11Updated 3 weeks ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆21Updated 9 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆18Updated 4 months ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- ☆24Updated last year