☆14Oct 17, 2024Updated 2 years ago
Alternatives and similar repositories for CSV-Filter
Users that are interested in CSV-Filter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆22Nov 20, 2022Updated 3 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- ☆19Nov 22, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Snakemake workflow for the vg toolkit.☆12Mar 19, 2026Updated 7 months ago
- A Snakemake-based structural variant analysis workflow leveraging OctopusV's capabilities.☆11Mar 31, 2025Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆38Sep 13, 2023Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 months ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated 2 years ago
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 3 years ago
- Merge and compare structural variants across callers, samples, and platforms. Standardizes BND-heavy output from GRIDSS, SvABA, Sniffles,…☆51Sep 23, 2026Updated last month
- ☆11May 15, 2025Updated last year
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 9 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆24Aug 8, 2022Updated 4 years ago
- De novo tandem repeat calling from PacBio HiFi data☆19Oct 1, 2026Updated 3 weeks ago
- Toolkit for calling structural variants using short or long reads☆120Aug 21, 2026Updated 2 months ago
- ☆24Feb 22, 2023Updated 3 years ago
- PHasing Reads in Areas Of Homozygosity☆14Feb 12, 2025Updated last year
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆32Nov 25, 2024Updated last year
- KaryoScope: rapid, alignment-free sequence annotation for the pangenome era☆29Oct 21, 2026Updated last week
- This is the software for FAst Marginal Epistasis test (FAME)☆14Jul 21, 2026Updated 3 months ago
- A CNN model to identify MEIs in WGS☆14Mar 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- Variant sequence context analysis tool☆10Jul 5, 2024Updated 2 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- ☆10Jan 20, 2025Updated last year
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Complex structural variant visualization for HiFi sequencing data☆51Aug 6, 2026Updated 2 months ago
- ☆12Apr 18, 2022Updated 4 years ago
- de novo variant calling in trio using Nanopore long-reads☆15Aug 11, 2025Updated last year
- Blazingly fast, streaming duplicate detection for NGS data☆22Oct 22, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 11 months ago
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- GWAS and rare variants tests at high speed using regenie☆16Oct 14, 2026Updated 2 weeks ago
- VNTR annotation using motif selection☆44Oct 23, 2026Updated last week
- Kmer Analysis of Pileups for Genotyping☆43Jul 16, 2026Updated 3 months ago
- ☆47Jul 16, 2026Updated 3 months ago