☆14Oct 17, 2024Updated last year
Alternatives and similar repositories for CSV-Filter
Users that are interested in CSV-Filter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆22Nov 20, 2022Updated 3 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆37Sep 13, 2023Updated 2 years ago
- End-to-end structural variant post-processing: unify, merge, compare, and export from SV caller.☆43Jul 1, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 5 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆32Nov 25, 2024Updated last year
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 7 months ago
- Toolkit for calling structural variants using short or long reads☆115Jul 14, 2026Updated last week
- ☆23Aug 8, 2022Updated 3 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- ☆19Nov 22, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Blazingly fast, streaming duplicate detection for NGS data☆17Updated this week
- STR genotyping with WGS and Amplicon/Target sequencing data☆14Feb 2, 2026Updated 5 months ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- ☆12Apr 18, 2022Updated 4 years ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆15Jun 29, 2026Updated 3 weeks ago
- ☆44Updated this week
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 8 months ago
- Complex structural variant visualization for HiFi sequencing data☆49Oct 24, 2025Updated 8 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- GWAS and rare variants tests at high speed using regenie☆16Feb 18, 2026Updated 5 months ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆20Mar 31, 2026Updated 3 months ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18May 4, 2026Updated 2 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆57Mar 7, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 6 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆49Dec 6, 2024Updated last year
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 5 years ago
- GPL Euler equation solver☆17Feb 14, 2016Updated 10 years ago
- WDL’s and Dockerfiles for assembly QC process☆73Jun 12, 2026Updated last month
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year