lvclark / polysat
polysat 1.7: tools for polyploid microsatellite analysis
☆12Updated 3 months ago
Alternatives and similar repositories for polysat:
Users that are interested in polysat are comparing it to the libraries listed below
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆17Updated last year
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- population genetic simulations with R and Shiny☆27Updated 4 months ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆23Updated 8 months ago
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆18Updated last year
- R package: Evolutionary biology in R☆15Updated 10 months ago
- phylogenetic networks using ggplot2 and ggtree☆13Updated 2 months ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Updated 6 years ago
- A suite of methods and models for studying evolutionary radiations☆23Updated 2 years ago
- initial commit☆26Updated 2 years ago
- R package to run BEAST2☆11Updated last month
- ☆19Updated last year
- phylogenetic networks using ggplot2 and ggtree☆11Updated 2 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Updated last year
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/☆12Updated 11 months ago
- R Interfaces to Phylogenetic Software☆12Updated last month
- ☆18Updated 9 years ago
- An Amazing Shiny App☆17Updated 3 years ago
- Access sequences from the 1000 Plant Initiative (1KP)☆13Updated last year
- R package to estimate kinship and FST from SNP data☆20Updated 5 months ago
- A textbook on population genetics☆18Updated 3 months ago
- A smorgasbord of R functions for population genomic analyses☆18Updated 2 weeks ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 2 weeks ago
- Process MS results in R, in a tidy way☆17Updated 6 years ago
- ☆33Updated 4 months ago
- ☆12Updated 4 months ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Updated 9 years ago
- An R package to help in plotting PCA results nicely.☆13Updated 5 years ago
- diveRsity: A comprehensive, general purpose population genetics analysis package.☆23Updated 7 years ago
- Phylogenetic plots for R and ggplot☆27Updated 12 years ago