Transposable element expression at unique loci in single cells with CELLO-seq
☆12Jun 17, 2024Updated 2 years ago
Alternatives and similar repositories for CELLOseq
Users that are interested in CELLOseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- ☆13Mar 29, 2024Updated 2 years ago
- ☆17Apr 9, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- ☆27May 8, 2022Updated 4 years ago
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆15Mar 10, 2023Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆39Nov 27, 2024Updated last year
- ☆19May 19, 2022Updated 4 years ago
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 4 years ago
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Dec 7, 2020Updated 5 years ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- ☆23Mar 22, 2023Updated 3 years ago
- ☆30Jul 15, 2021Updated 5 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆25Feb 21, 2022Updated 4 years ago
- TSSr is an R/Bioconductor package for comprehensive analyses of transcription start site (TSS) data☆11Jun 17, 2026Updated last month
- ☆20May 1, 2023Updated 3 years ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Implementation of the AIControl paper in Julia 1.0☆17Mar 4, 2019Updated 7 years ago
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 3 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Jan 22, 2020Updated 6 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- ☆15Dec 22, 2025Updated 6 months ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆23Jul 28, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- ☆48Apr 18, 2020Updated 6 years ago
- ☆10May 31, 2022Updated 4 years ago
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- This repository contains the source code for the tappAS application. See README for details.☆22Jun 23, 2026Updated 3 weeks ago
- Code and analysis pipeline for NASC-seq.☆11Jun 14, 2022Updated 4 years ago