Alternatives and similar repositories for MITGARD

Users that are interested in MITGARD are comparing it to the libraries listed below

• PuttickMacroevolution / MCMCtreeR
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆45Updated 5 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated 11 months ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆47Updated 8 months ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆28Updated last month
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆33Updated 2 months ago
• slimsuite / diploidocus
  Diploid genome assembly analysis tools
  ☆14Updated last year
• merlyescalona / yagcloser
  YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
  ☆13Updated 2 years ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆17Updated 2 years ago
• slimsuite / buscomp
  BUSCOMP: BUSCO Compiler and Comparison tool
  ☆21Updated last year
• makovalab-psu / DiscoverY
  K-mer based classifier for Y-contig identification from Whole Genome Assemblies
  ☆13Updated 5 years ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆26Updated last month
• mongiardino / genesortR
  Sorting and subsampling phylogenomic datasets
  ☆25Updated 6 months ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆43Updated 2 months ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆38Updated 2 years ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆42Updated last month
• hillerlab / ForwardGenomics
  Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
  ☆24Updated 2 years ago
• gatech-genemark / GeneMark-ETP
  GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology
  ☆25Updated 6 months ago
• SamiLhll / macrosyntR
  R package for comparison of synteny conservation at the genome-wide scale.
  ☆14Updated last year
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆32Updated 2 years ago
• linudz / caastools
  CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.
  ☆21Updated last year
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆29Updated last year
• bcgsc / mtGrasp
  mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization
  ☆20Updated 8 months ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆27Updated 2 years ago
• sabifo4 / Tutorial_MCMCtree
  MCMCtree tutorials
  ☆24Updated last year
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆32Updated last month
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆37Updated this week
• yanyew / SynGAP
  ☆39Updated 11 months ago
• GDKO / AvP
  Automatic evaluation of HGTs
  ☆30Updated 8 months ago
• hsigeman / findZX
  ☆23Updated 3 years ago