Shamir-Lab / RecyclerLinks
This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir
☆59Updated 4 years ago
Alternatives and similar repositories for Recycler
Users that are interested in Recycler are comparing it to the libraries listed below
Sorting:
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Visualize whole genome alignments as linear maps☆73Updated 9 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆67Updated last week
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Split Kmer Analysis☆65Updated 3 years ago
- De novo Extraction of Strains from MetAgeNomes☆70Updated 5 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- Filter SAM file for soft and hard clipped alignments☆49Updated last year
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- Gene-flank analysis tool☆28Updated 6 months ago
- Synteny Imager☆63Updated 10 months ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆58Updated last year
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 3 weeks ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago
- ☆26Updated 5 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated 2 weeks ago
- ☆36Updated 3 years ago
- ☆53Updated 4 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆59Updated 2 years ago