An R function to compute Concordance Factors from SNP datasets
☆15Dec 4, 2025Updated 3 months ago
Alternatives and similar repositories for SNPs2CF
Users that are interested in SNPs2CF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A birth-death-hybridization based phylogenetic network simulator.☆11Oct 2, 2024Updated last year
- A Julia package for estimating phylogenetic networks from genomic data☆20Jun 3, 2024Updated last year
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 3 years ago
- Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps aro…☆14Apr 20, 2024Updated last year
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- ☆12Mar 11, 2025Updated last year
- Calculate Hybrid Index and Heterozygosity from SNP data☆15Sep 2, 2025Updated 6 months ago
- method for modeling continuous and discrete population genetic structure☆38Jan 8, 2024Updated 2 years ago
- Bayesian species delimitation integrating genes and traits☆12Aug 17, 2021Updated 4 years ago
- ☆16Mar 10, 2026Updated last week
- An R Package to build and simulate coalescent models☆20Mar 16, 2026Updated last week
- ☆13Aug 18, 2023Updated 2 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- Presentation at the Joint Statistical Meetings 2021☆12Aug 8, 2021Updated 4 years ago
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Feb 19, 2022Updated 4 years ago
- Using Digitized Collections-Based Data in Research: Applications for Ecology, Phylogenetics, and Biogeography Botany 2025.☆14Aug 7, 2025Updated 7 months ago
- Counterfactual Inference by Machine Learning and Attribution Models☆15Aug 24, 2023Updated 2 years ago
- PhyloNetworks: a julia package with utilities for phylogenetic networks☆171Mar 10, 2026Updated last week
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆15Jan 3, 2026Updated 2 months ago
- Display utilities for phylogenetic trees and networks☆19Mar 9, 2026Updated 2 weeks ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last month
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆18Feb 19, 2026Updated last month
- Workflow to detect and phase hybrids in target capture data☆20Mar 9, 2023Updated 3 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 4, 2026Updated 2 weeks ago
- Course material for UBC Biol525D☆12Aug 15, 2019Updated 6 years ago
- A library of standard population genetic models☆139Updated this week
- deep learning prediction of geographic location from individual genome sequences☆52Jan 20, 2025Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆46Mar 7, 2024Updated 2 years ago
- A pipeline that accepts a VCF file to run through Admixture☆64Jan 2, 2025Updated last year
- ☆10Sep 4, 2025Updated 6 months ago
- A genome-wide IM blockwise likelihood estimation toolkit☆17Jun 24, 2024Updated last year
- Detection of evolutionary shifts in Ornstein-Uhlenbeck models☆19Aug 5, 2022Updated 3 years ago
- Primer Seek in RNA-Seq. Designs RT-PCR primers that validate alternative splicing events from RNA-Seq data.☆13Nov 27, 2016Updated 9 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated last month
- Machuruku☆32Jan 20, 2025Updated last year
- ☆38Apr 8, 2022Updated 3 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year