An R function to compute Concordance Factors from SNP datasets
☆16Dec 4, 2025Updated 6 months ago
Alternatives and similar repositories for SNPs2CF
Users that are interested in SNPs2CF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A birth-death-hybridization based phylogenetic network simulator.☆11Oct 2, 2024Updated last year
- A Julia package for estimating phylogenetic networks from genomic data☆20Jun 3, 2024Updated 2 years ago
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 4 years ago
- Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps aro…☆14Apr 20, 2024Updated 2 years ago
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12Mar 11, 2025Updated last year
- Calculate Hybrid Index and Heterozygosity from SNP data☆17Sep 2, 2025Updated 9 months ago
- method for modeling continuous and discrete population genetic structure☆38May 2, 2026Updated last month
- Bayesian species delimitation integrating genes and traits☆12Aug 17, 2021Updated 4 years ago
- An R Package to build and simulate coalescent models☆20Updated this week
- ☆13Aug 18, 2023Updated 2 years ago
- ☆17Apr 24, 2026Updated last month
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- Presentation at the Joint Statistical Meetings 2021☆12Aug 8, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Feb 19, 2022Updated 4 years ago
- Using Digitized Collections-Based Data in Research: Applications for Ecology, Phylogenetics, and Biogeography Botany 2025.☆14Jun 3, 2026Updated last week
- Counterfactual Inference by Machine Learning and Attribution Models☆15Aug 24, 2023Updated 2 years ago
- PhyloNetworks: a julia package with utilities for phylogenetic networks☆176Jun 3, 2026Updated last week
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆17Jan 3, 2026Updated 5 months ago
- Display utilities for phylogenetic trees and networks☆22Mar 30, 2026Updated 2 months ago
- Homologizer: phasing gene copies into polyploid subgenomes☆12Feb 3, 2026Updated 4 months ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆19May 26, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Workflow to detect and phase hybrids in target capture data☆20Mar 9, 2023Updated 3 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 31, 2026Updated 2 months ago
- Course material for UBC Biol525D☆12Aug 15, 2019Updated 6 years ago
- A library of standard population genetic models☆142Jun 3, 2026Updated last week
- deep learning prediction of geographic location from individual genome sequences☆53Jan 20, 2025Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆48Mar 7, 2024Updated 2 years ago
- A pipeline that accepts a VCF file to run through Admixture☆64May 3, 2026Updated last month
- ☆12Sep 4, 2025Updated 9 months ago
- A genome-wide IM blockwise likelihood estimation toolkit☆18Jun 24, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Detection of evolutionary shifts in Ornstein-Uhlenbeck models☆19Aug 5, 2022Updated 3 years ago
- Primer Seek in RNA-Seq. Designs RT-PCR primers that validate alternative splicing events from RNA-Seq data.☆13Nov 27, 2016Updated 9 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 3 months ago
- Machuruku☆32Jan 20, 2025Updated last year
- ☆38Apr 13, 2026Updated last month
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year