melisaolave / SNPs2CFLinks
An R function to compute Concordance Factors from SNP datasets
☆15Updated last month
Alternatives and similar repositories for SNPs2CF
Users that are interested in SNPs2CF are comparing it to the libraries listed below
Sorting:
- This repository contains the code and manual for the R package delimitR.☆17Updated 3 years ago
- Calculate Hybrid Index and Heterozygosity from SNP data☆15Updated 4 months ago
- R package for analysis of hybrids and hybrid zones☆21Updated 2 years ago
- Workflow to detect and phase hybrids in target capture data☆20Updated 2 years ago
- ☆43Updated 2 years ago
- ☆18Updated 5 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆30Updated last year
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆18Updated last month
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Updated 3 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆17Updated last year
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Updated 6 years ago
- Package for species delimitation analysis☆11Updated last year
- An R Package to build and simulate coalescent models☆20Updated 4 months ago
- Phylogenetic penalized likelihood☆54Updated 6 months ago
- A package for population structure inference from RAD-seq data☆34Updated 4 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆16Updated last year
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Updated last year
- ☆26Updated 4 years ago
- ☆19Updated 8 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆19Updated last year
- ☆21Updated 3 weeks ago
- Code for computing various support scores for internodes☆19Updated 5 years ago
- Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)☆10Updated 5 years ago
- ☆13Updated 10 months ago
- Population assignment analysis using R☆15Updated 6 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated 3 months ago
- The integrated Sequentially Markovian Coalescent☆15Updated last month
- Topology weighting from unphased genotypes of any ploidy☆20Updated last month
- association analysis of distance matrices using gradient forest approach☆16Updated 3 months ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago