A Nextflow Genome-Wide Association Study (GWAS) Pipeline
☆36Jun 26, 2025Updated 8 months ago
Alternatives and similar repositories for nf-gwas-pipeline
Users that are interested in nf-gwas-pipeline are comparing it to the libraries listed below
Sorting:
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- A Python package with integrated lncRNA prediction methods☆12Feb 17, 2021Updated 5 years ago
- A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.☆15Aug 16, 2024Updated last year
- ☆29Apr 16, 2023Updated 2 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- tips and tricks in genome-wide association studies - a tutorial☆14Jul 25, 2023Updated 2 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 3 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Oct 9, 2025Updated 5 months ago
- Make interactive LocusZoom plots from a local GWAS file☆10May 9, 2025Updated 10 months ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 2 months ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 2 years ago
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago
- Bioinformatics Pipeline☆12Oct 7, 2022Updated 3 years ago
- ☆11Dec 15, 2025Updated 2 months ago
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆12Sep 3, 2024Updated last year
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- ☆10Feb 25, 2024Updated 2 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆80Oct 7, 2025Updated 5 months ago
- I often use some of the self-written programs.☆16Nov 13, 2025Updated 3 months ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- Full GATK SNP calling pipeline☆24Oct 30, 2025Updated 4 months ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- WGS Sequencing In Hadoop MapReduce☆15Oct 13, 2020Updated 5 years ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- Pipelines for analyzing genomic or transcriptomic data☆17Feb 29, 2024Updated 2 years ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆16Feb 9, 2026Updated last month
- ☆17Nov 26, 2023Updated 2 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated 11 months ago
- Notes on SNP-related tools and genome variation analysis☆28Aug 30, 2025Updated 6 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Apr 11, 2018Updated 7 years ago
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆18Jan 4, 2025Updated last year
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- Fine-mapping with infinitesimal effects☆20May 27, 2025Updated 9 months ago
- PredictDB Pipeline for GTEx v7 data☆18Nov 9, 2022Updated 3 years ago
- Codebook from my GWAS cookbook☆193May 26, 2022Updated 3 years ago
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆19Jan 9, 2026Updated 2 months ago
- Scripts for NGS processing☆17Sep 6, 2017Updated 8 years ago