A Nextflow Genome-Wide Association Study (GWAS) Pipeline
☆36Jul 1, 2026Updated 2 weeks ago
Alternatives and similar repositories for nf-gwas-pipeline
Users that are interested in nf-gwas-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.☆16Aug 16, 2024Updated last year
- tips and tricks in genome-wide association studies - a tutorial☆14Jul 25, 2023Updated 2 years ago
- Make interactive LocusZoom plots from a local GWAS file☆10May 9, 2025Updated last year
- A Python package with integrated lncRNA prediction methods☆13Feb 17, 2021Updated 5 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆14May 11, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Bioinformatics Pipeline☆12Oct 7, 2022Updated 3 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Updated this week
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆30Aug 2, 2022Updated 3 years ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 3 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆84Oct 7, 2025Updated 9 months ago
- Genotype Imputation Pipeline for H3Africa☆26Nov 5, 2024Updated last year
- ☆31Apr 16, 2023Updated 3 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 6 months ago
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago
- An R package for creating ggplot2 based miami plots.☆19Mar 7, 2025Updated last year
- ☆11Mar 14, 2026Updated 4 months ago
- Codebook from my GWAS cookbook☆196May 26, 2022Updated 4 years ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 2 years ago
- Nextflow basic tutorial for newbie users☆34Jun 17, 2018Updated 8 years ago
- Open Targets python framework for post-GWAS analysis☆57Updated this week
- Manhattan plot Generator☆25Jun 1, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆12Sep 3, 2024Updated last year
- Fine-mapping with infinitesimal effects☆20May 5, 2026Updated 2 months ago
- I often use some of the self-written programs.☆16Jun 12, 2026Updated last month
- GWAS Pipeline for H3Africa☆116Mar 12, 2026Updated 4 months ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆17Jan 4, 2025Updated last year
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Notes on SNP-related tools and genome variation analysis☆29May 23, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Nov 26, 2023Updated 2 years ago
- WGS Sequencing In Hadoop MapReduce☆15Oct 13, 2020Updated 5 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Toolkit for analyzing genetics data from admixed populations☆32Feb 13, 2025Updated last year
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆15Feb 9, 2026Updated 5 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆28Apr 11, 2018Updated 8 years ago