montilab / nf-gwas-pipeline
A Nextflow Genome-Wide Association Study (GWAS) Pipeline
☆33Updated 2 months ago
Alternatives and similar repositories for nf-gwas-pipeline:
Users that are interested in nf-gwas-pipeline are comparing it to the libraries listed below
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆65Updated last month
- visual analysis of your VCF files☆32Updated 2 years ago
- ☆26Updated 2 weeks ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated 5 months ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆35Updated 10 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 9 months ago
- Repository for the Anczukow-Lab splicing pipeline☆15Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 weeks ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated last month
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆28Updated this week
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 3 months ago
- Filter and prioritize fusion calls☆20Updated 6 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆34Updated this week
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated last week
- ☆22Updated 4 months ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated last year
- ☆23Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Large scale ancestry inference from PCA data☆21Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated this week
- A curated list of bioinformatics bench-marking papers and resources.☆14Updated 5 years ago
- interactive plots for differential expression analysis☆32Updated last month
- ☆38Updated 7 months ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago