bcgsc / SSAKELinks
đś Genome assembly with short sequence reads
â25Updated last year
Alternatives and similar repositories for SSAKE
Users that are interested in SSAKE are comparing it to the libraries listed below
Sorting:
- novoBreak: local assembly for breakpoint detection in cancer genomesâ26Updated 7 years ago
- Find Unique genomic Regionsâ29Updated 2 months ago
- Trimming tool for Oxford Nanopore sequence dataâ21Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classesâ31Updated 11 months ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.â10Updated 5 years ago
- URMAP ultra-fast read mapperâ39Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)â49Updated 5 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.â24Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.â37Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasetsâ22Updated 7 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreadsâ15Updated 3 years ago
- MIRA sequence assemblerâ29Updated 5 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.â37Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequencesâ42Updated last year
- Generate unique KMERs for every contig in a FASTA fileâ48Updated 2 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencingâ16Updated 7 years ago
- full taxonomer cython repositoryâ22Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequencesâ60Updated 5 years ago
- Structural variant callerâ54Updated 3 years ago
- Pipeline for structural variant image curation and analysis.â48Updated 3 years ago
- Population-wide Deletion Callingâ35Updated last month
- program for haplotype phasing from sequence reads and related toolsâ25Updated 6 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS readsâ16Updated last week
- A toolkit to design standard primers, multiplexed primers, and primers around SV'sâ12Updated 2 years ago
- â27Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF fâŚâ31Updated 3 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA dataâ23Updated 9 months ago
- Master of Pores 2â23Updated 6 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.â32Updated last year
- PopSTR - A Population based microsatellite genotyperâ33Updated last year