Transfer learning for Mutation Effect Prediction
☆17Feb 13, 2024Updated 2 years ago
Alternatives and similar repositories for TransMEP
Users that are interested in TransMEP are comparing it to the libraries listed below
Sorting:
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 6 months ago
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆89Nov 5, 2025Updated 4 months ago
- ☆31Nov 23, 2025Updated 3 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆41May 29, 2024Updated last year
- Protein language model trained on coding DNA☆53Oct 20, 2024Updated last year
- ☆20May 7, 2024Updated last year
- Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"☆57Nov 5, 2025Updated 4 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆34Nov 18, 2023Updated 2 years ago
- Structure-Informed Protein Language Model☆38Feb 15, 2024Updated 2 years ago
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago
- ☆15Dec 21, 2021Updated 4 years ago
- ☆41Jul 28, 2025Updated 7 months ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆75Mar 27, 2025Updated 11 months ago
- ☆31Oct 7, 2025Updated 5 months ago
- Efficient implementatin of ESM family.☆81Sep 9, 2025Updated 6 months ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- dMaSIF implementation for google colab☆36Mar 24, 2023Updated 2 years ago
- This is the code for our paper Ligand Binding Prediction using Protein Structure Graphs and Residual Graph Attention Networks☆11Apr 29, 2022Updated 3 years ago
- PPI version of Pythia☆27Sep 12, 2025Updated 6 months ago
- ☆14Sep 19, 2024Updated last year
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated last year
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆60Feb 3, 2026Updated last month
- Results and data from the pilot round of the Protein Engineering Tournament☆30Mar 25, 2025Updated 11 months ago
- ☆18Oct 30, 2023Updated 2 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- FINCHES (First-principle Interactions via CHEmical Specificity) - Python package for predicting chemically-specific molecular interaction…☆43Feb 9, 2026Updated last month
- Learning the language of protein-protein interactions☆139Jan 12, 2026Updated 2 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆164Aug 24, 2023Updated 2 years ago
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆29Jan 16, 2026Updated 2 months ago
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆46Oct 17, 2024Updated last year
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆22Aug 8, 2024Updated last year
- CLIP-based model for aligning epitopes to immune receptors☆12Apr 30, 2025Updated 10 months ago
- ☆30Oct 20, 2023Updated 2 years ago
- ☆24May 19, 2025Updated 10 months ago
- ☆76Oct 27, 2021Updated 4 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 6 months ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Insights into the inner workings of transformer models for protein function prediction☆14Feb 9, 2024Updated 2 years ago