Alternatives and similar repositories for TransMEP

Users that are interested in TransMEP are comparing it to the libraries listed below

• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆30Updated last year
• zzhangzzhang / pLMs-interpretability
  ☆29Updated 10 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆70Updated 5 months ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆30Updated 5 months ago
• PDBeurope / protein-cluster-conformers
  Clusters protein chains based on CA distance difference
  ☆16Updated 6 months ago
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆31Updated last month
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆35Updated last year
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆38Updated 2 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 11 months ago
• LSSI-ETH / meta-learning-for-protein-engineering
  Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…
  ☆20Updated last year
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆70Updated 2 months ago
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆32Updated 2 years ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 3 months ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• gitter-lab / metl-pretrained
  Pretrained METL models with minimal dependencies
  ☆15Updated 3 months ago
• Bitbol-Lab / DiffPALM
  Differentiable Pairing using Alignment-based Language Models
  ☆23Updated last year
• ProteinDesignLab / protpardelle-1c
  Updated Protpardelle models with more robust motif scaffolding and multichain support
  ☆28Updated this week
• HySonLab / LatentDE
  LatentDE: Latent-based Directed Evolution for Protein Sequence Design
  ☆36Updated 5 months ago
• ihmwg / python-modelcif
  Python package for handling ModelCIF mmCIF and BinaryCIF files
  ☆13Updated last week
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆19Updated last month
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆51Updated last month
• silicogenesis / protkit
  A Unified Approach to Protein Engineering
  ☆42Updated last year
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆40Updated 5 months ago
• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆19Updated last month
• programmablebio / saltnpeppr
  An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders
  ☆16Updated 11 months ago
• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆38Updated 4 years ago
• HannesStark / CodonMPNN
  ☆28Updated 8 months ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆77Updated 6 months ago
• Profluent-AI / proseLM-public
  Adapting protein language models for structure-conditioned design
  ☆40Updated last year
• SimonKitSangChu / EsmTherm
  ☆13Updated last year