Alternatives and similar repositories for TransMEP

Users that are interested in TransMEP are comparing it to the libraries listed below

• PDBeurope / protein-cluster-conformers
  Clusters protein chains based on CA distance difference
  ☆14Updated 4 months ago
• LSSI-ETH / meta-learning-for-protein-engineering
  Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…
  ☆20Updated 10 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆27Updated last year
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆32Updated last year
• bwicky / oligomer_hallucination
  ☆35Updated last year
• gitter-lab / metl-pretrained
  Pretrained METL models with minimal dependencies
  ☆14Updated last month
• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆18Updated 2 months ago
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆37Updated 2 weeks ago
• KULL-Centre / _2024_cagiada_stability
  ☆67Updated 3 months ago
• johnyang101 / pmpnndiff
  Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion
  ☆17Updated last year
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 5 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 9 months ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆29Updated 3 months ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆31Updated 7 months ago
• HannesStark / CodonMPNN
  ☆27Updated 6 months ago
• Profluent-Internships / ProCALM
  A conditionally adapted protein language model for the generation of enzymes
  ☆21Updated 7 months ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆30Updated 11 months ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆37Updated 2 months ago
• barricklab-at-jhu / SVD-of-MSAs
  This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…
  ☆11Updated 10 months ago
• kiharalab / Distance-AF
  Public version for Distance-AF
  ☆22Updated 2 weeks ago
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆32Updated 2 years ago
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆32Updated 3 weeks ago
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆43Updated last week
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆33Updated 3 months ago
• zzhangzzhang / pLMs-interpretability
  ☆27Updated 8 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆69Updated this week
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆32Updated 6 months ago
• alicetinglab / ConformationalBiasing
  Code for designing biased protein states
  ☆13Updated last month
• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆35Updated 3 years ago
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆31Updated 2 weeks ago