thackl / seq-scripts
scripts for sequence and feature conversion, annotation, analysis ...
☆27Updated 10 months ago
Alternatives and similar repositories for seq-scripts:
Users that are interested in seq-scripts are comparing it to the libraries listed below
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆22Updated 4 months ago
- Yet another Hi-C scaffolding tool☆19Updated 4 months ago
- ☆32Updated 4 years ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- scripts to parse and analyse MCScanX collinearity output☆30Updated 5 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 5 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 8 months ago
- A simple program for evaluate the assembly of a give genome.☆18Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆37Updated last week
- Sorting and subsampling phylogenomic datasets☆22Updated last year
- Transposable Elements MOvement detection using LOng reads☆21Updated 3 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- A shiny application to visualize MCscan result☆35Updated 2 years ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated last year
- ☆24Updated last week
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- An R package to infer and analyze synteny networks from protein sequences☆27Updated 2 months ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- ☆9Updated 9 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆17Updated this week
- ☆21Updated 5 years ago
- Calculate circos format data of GC content and GC skew from genome data.☆12Updated 10 years ago