thackl / seq-scriptsLinks
scripts for sequence and feature conversion, annotation, analysis ...
☆28Updated 8 months ago
Alternatives and similar repositories for seq-scripts
Users that are interested in seq-scripts are comparing it to the libraries listed below
Sorting:
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated 2 months ago
- An R package to infer and analyze synteny networks from protein sequences☆34Updated 3 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 2 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- ☆21Updated 6 years ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆23Updated 2 weeks ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆22Updated 3 weeks ago
- Multi-genome synteny block visualization tool☆47Updated last month
- Chromosome-level synteny plotting using orthologous regions☆30Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆29Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Sorting and subsampling phylogenomic datasets☆27Updated 7 months ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆14Updated 4 months ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19Updated 6 months ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- HyPhy standalone analyses☆48Updated 2 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- A haplotype analysis toolkit for natural variation study.☆30Updated 2 years ago
- ☆33Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago