thackl / seq-scriptsLinks
scripts for sequence and feature conversion, annotation, analysis ...
☆28Updated 9 months ago
Alternatives and similar repositories for seq-scripts
Users that are interested in seq-scripts are comparing it to the libraries listed below
Sorting:
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 3 months ago
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 5 months ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- R package to draw syntenic plots in 3 different styles☆42Updated 4 months ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- ☆21Updated 6 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Calculate circos format data of GC content and GC skew from genome data.☆12Updated 3 months ago
- Multi-genome synteny block visualization tool☆52Updated 2 months ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆22Updated 2 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆24Updated 3 weeks ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 3 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆32Updated 4 years ago
- ☆26Updated 10 months ago
- ☆35Updated 5 years ago
- Computational Analysis of Gene Expression Evolution☆44Updated 4 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- ☆29Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago
- methods for orphan gene prediction paper optimization☆25Updated 4 years ago
- Sorting and subsampling phylogenomic datasets☆28Updated 8 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- ☆22Updated 6 years ago