SouthGreenPlatform / VcfHunterLinks
VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant calling, manipulate vcf files, perform chromosome painting of accessions based on the contribution of ancestral groups, select marker for genetic map analysis and perform pairwise chromosome linkage of ordered…
☆15Updated last year
Alternatives and similar repositories for VcfHunter
Users that are interested in VcfHunter are comparing it to the libraries listed below
Sorting:
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 months ago
- ☆20Updated 3 weeks ago
- Synteny Mapping and Analysis Program☆30Updated last week
- ☆10Updated 10 months ago
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago
- chloroplast genome assembly using long reads data☆14Updated 6 months ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 4 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36Updated 7 months ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆29Updated last month
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆26Updated 9 months ago
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆18Updated 5 months ago
- This is the Haplotypo repository☆22Updated last year
- ☆32Updated last year
- Identification of conserved non-coding sequences in plants☆31Updated 3 months ago
- Generating UTRs from SHort Reads☆12Updated 5 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 5 years ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆14Updated 11 months ago
- Consensus genome annotation using OMA☆31Updated 6 months ago
- De novo tandem repeat calling from PacBio HiFi data☆19Updated last month
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Updated last year
- SV calling for diploid assemblies☆30Updated last year
- MCHelper: An automatic tool to curate transposable element libraries☆45Updated 6 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Updated 2 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Updated last year
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Updated 4 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Updated 3 years ago
- ☆19Updated last year
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆24Updated last month