SouthGreenPlatform / VcfHunter
VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant calling, manipulate vcf files, perform chromosome painting of accessions based on the contribution of ancestral groups, select marker for genetic map analysis and perform pairwise chromosome linkage of ordered…
☆13Updated 10 months ago
Alternatives and similar repositories for VcfHunter:
Users that are interested in VcfHunter are comparing it to the libraries listed below
- A Nextflow pipeline for evaluating assembly quality☆28Updated 2 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated 10 months ago
- A tutorial on structural variant calling for short read sequencing data☆27Updated 3 months ago
- MCHelper: An automatic tool to curate transposable element libraries☆33Updated 2 months ago
- PhyloSD: Phylogenomic Subgenome Detection pipeline☆11Updated 2 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated last year
- Annotation helper tool for the manual curation of transposable element consensus sequences☆47Updated 9 months ago
- Scripts to convert between file formats for various analyses☆15Updated last week
- ☆37Updated last week
- Toolkit to convert the output of common variant calling programs to VCF☆21Updated 2 years ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 5 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- This is the Haplotypo repository☆20Updated 8 months ago
- FamDB file format library and utilities☆20Updated last week
- orthology assignment using phylogenetic and network analyses☆46Updated 4 months ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆20Updated 9 months ago
- A program for assessing the T2T genome continuity☆64Updated 2 months ago
- perSVade: personalized Structural Variation detection☆38Updated 3 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- A pipeline for isoseq☆23Updated 6 years ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆19Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated last week
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated last year
- scripts to parse and analyse MCScanX collinearity output☆30Updated 4 years ago
- ☆58Updated last year
- ☆42Updated 9 months ago
- Mitochondrial Genome Assembly☆14Updated last year
- Convert Tandem Repeat Finder dat file output into gff3 format☆24Updated last month
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆26Updated 3 years ago