SouthGreenPlatform / VcfHunterLinks
VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant calling, manipulate vcf files, perform chromosome painting of accessions based on the contribution of ancestral groups, select marker for genetic map analysis and perform pairwise chromosome linkage of ordered…
☆14Updated last year
Alternatives and similar repositories for VcfHunter
Users that are interested in VcfHunter are comparing it to the libraries listed below
Sorting:
- ☆20Updated 8 months ago
- Synteny Mapping and Analysis Program☆27Updated 2 weeks ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆23Updated 4 months ago
- Toolkit to convert the output of common variant calling programs to VCF☆23Updated 2 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Updated 2 years ago
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆18Updated 3 weeks ago
- A Nextflow pipeline for evaluating assembly quality☆37Updated 2 weeks ago
- chloroplast genome assembly using long reads data☆13Updated last month
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆27Updated 3 years ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆49Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated this week
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆49Updated 5 months ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated last year
- MCMCtree tutorials☆24Updated last year
- ☆32Updated last year
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆22Updated 8 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆31Updated 2 weeks ago
- Structural variant merging tool☆53Updated last year
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆22Updated 2 months ago
- PhyloSD: Phylogenomic Subgenome Detection pipeline☆11Updated 3 years ago
- Scripts to convert between file formats for various analyses☆17Updated 3 months ago
- Detecting NUMTs from WGS☆12Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated last year
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆13Updated 5 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- MCHelper: An automatic tool to curate transposable element libraries☆37Updated 2 months ago
- Diploid genome assembly analysis tools☆14Updated 11 months ago
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆18Updated 5 years ago