PalamaraLab / ASMCLinks
Ascertained Sequentially Markovian Coalescent
☆16Updated 3 weeks ago
Alternatives and similar repositories for ASMC
Users that are interested in ASMC are comparing it to the libraries listed below
Sorting:
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Updated last year
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 2 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- Phasing reads with secondary alignments☆21Updated 11 months ago
- ☆14Updated last year
- The MafFilter genome alignment processor☆19Updated 6 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- ☆12Updated 4 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 11 months ago
- Consensus genome annotation using OMA☆27Updated 4 months ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Invertory of TE-gene isoforms☆13Updated 2 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- ☆14Updated 2 years ago
- Code repository for the T2T-Y paper☆24Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 11 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- ☆16Updated 2 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆14Updated 6 years ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆14Updated 9 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 5 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆10Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- ☆18Updated last year
- A tool for motif annotation and visualization in tandem repeats.☆11Updated 5 months ago