Ascertained Sequentially Markovian Coalescent
☆19Oct 23, 2026Updated this week
Alternatives and similar repositories for ASMC
Users that are interested in ASMC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Jun 15, 2026Updated 4 months ago
- ARG-Needle library for representing and analyzing ancestral recombination graphs (ARGs)☆10Nov 21, 2025Updated 11 months ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 3 years ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆20Oct 20, 2026Updated last week
- Sampling and inference of genealogies with recombination☆68Aug 21, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This fork of Illumina/ExpansionHunter introduces new features and optimizations☆19Updated this week
- STICI source code☆26Jan 13, 2026Updated 9 months ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated 2 years ago
- ☆17Mar 17, 2023Updated 3 years ago
- tandemtwister: Tandem repeat genotyping tool☆23Feb 1, 2026Updated 8 months ago
- Recomb-Mix: a local ancestry inference tool☆18Updated this week
- Genomics workflows for CPG using Hail Batch☆12Sep 8, 2026Updated last month
- Tandem repeat genotyping with long reads☆41Sep 23, 2025Updated last year
- Assessing confidence in introgression among four populations☆29Apr 19, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆53Oct 22, 2026Updated last week
- Short Tandem Repeat disease loci resource☆30Updated this week
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 9 months ago
- Toolkit for calling and analyzing de novo STR mutations☆17Dec 17, 2023Updated 2 years ago
- Python Breeding Optimizer and Simulator: A Python library for simulating and optimizing breeding pipelines.☆15Dec 10, 2024Updated last year
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆15Sep 2, 2021Updated 5 years ago
- Haplotype and population structure inference using neural networks.☆30Dec 5, 2024Updated last year
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated 11 months ago
- WDL pipelines for running regenie☆12Oct 9, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆28Jul 8, 2022Updated 4 years ago
- ☆22Jan 11, 2024Updated 2 years ago
- Cross-population fine-mapping☆49Dec 7, 2024Updated last year
- ☆14Feb 13, 2023Updated 3 years ago
- Scalable genomic analysis pipelines, written in WDL☆12Oct 16, 2026Updated last week
- seqpac - A Framework for small RNA analysis in R using Sequence-Based Counts☆10Oct 12, 2026Updated 2 weeks ago
- ☆11Feb 14, 2023Updated 3 years ago
- Software for estimating genome-wide genealogies for thousands of samples☆48May 19, 2026Updated 5 months ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆115Aug 18, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Aug 3, 2025Updated last year
- ☆35Nov 11, 2025Updated 11 months ago
- ☆102Apr 22, 2024Updated 2 years ago
- iLASH - IBD Estimation Using Locality Sensitive Hashing☆18Nov 6, 2025Updated 11 months ago
- ☆23May 26, 2021Updated 5 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- Project repository for the phase 3 main publication of the HGSVC☆13Feb 9, 2026Updated 8 months ago