PalamaraLab / ASMCLinks
Ascertained Sequentially Markovian Coalescent
☆16Updated last month
Alternatives and similar repositories for ASMC
Users that are interested in ASMC are comparing it to the libraries listed below
Sorting:
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Updated last year
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- ☆14Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 3 months ago
- ☆10Updated 9 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- Phasing reads with secondary alignments☆21Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆16Updated last year
- Homologizer: phasing gene copies into polyploid subgenomes☆10Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Scripts to do haplotype analysis on pan genomes.☆20Updated 5 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆16Updated 8 months ago
- Haplotype and population structure inference using neural networks.☆27Updated last year
- The MafFilter genome alignment processor☆19Updated 7 months ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- ☆16Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Updated last year
- Construct and Analyze the North American Vitis pangenome☆27Updated 3 months ago
- ☆12Updated 5 years ago
- Code repository for the T2T-Y paper☆24Updated 2 years ago
- ☆13Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated 3 weeks ago
- De-novo Assembly Structural Variant Caller☆13Updated 9 years ago
- Invertory of TE-gene isoforms☆13Updated 2 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- ☆16Updated 4 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago