PalamaraLab / ASMC
Ascertained Sequentially Markovian Coalescent
☆15Updated last year
Related projects ⓘ
Alternatives and complementary repositories for ASMC
- Phase reads, assemble haplotypes and detect SVs☆19Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆26Updated 3 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆13Updated last year
- ☆12Updated 2 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆14Updated 8 months ago
- ☆12Updated 7 months ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆11Updated 3 years ago
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆13Updated 3 years ago
- R-package: Calculation of haplotype blocks and libraries☆27Updated 7 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- ☆21Updated last month
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- ☆20Updated 11 months ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 6 months ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆23Updated 4 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- This is the Haplotypo repository☆20Updated 5 months ago
- Phasing reads with secondary alignments☆16Updated 7 months ago
- Convert HAL to VG☆21Updated 2 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 6 years ago
- Haplotype and population structure inference using neural networks.☆26Updated 3 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆16Updated 3 weeks ago
- Functions to compare a SV call sets against a truth set.☆25Updated 6 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆25Updated last month