PalamaraLab / ASMCLinks
Ascertained Sequentially Markovian Coalescent
☆16Updated 7 months ago
Alternatives and similar repositories for ASMC
Users that are interested in ASMC are comparing it to the libraries listed below
Sorting:
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆14Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- ☆14Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 6 years ago
- Benchmarking variant calling in polyploids☆15Updated 3 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- Phasing reads with secondary alignments☆18Updated 6 months ago
- R-package: Calculation of haplotype blocks and libraries☆30Updated 4 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 weeks ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 8 months ago
- ☆13Updated 3 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- Infer the age of ancestral nodes in a tree sequence.☆21Updated 2 weeks ago
- ☆12Updated 3 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆13Updated 2 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Haplotype and population structure inference using neural networks.☆27Updated 6 months ago
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆14Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- This is the Haplotypo repository☆20Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆16Updated 3 years ago