PalamaraLab / ASMC
Ascertained Sequentially Markovian Coalescent
☆15Updated 3 months ago
Alternatives and similar repositories for ASMC:
Users that are interested in ASMC are comparing it to the libraries listed below
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 3 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆14Updated 2 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆14Updated 11 months ago
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆14Updated 3 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- ☆20Updated last year
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- ☆13Updated 8 months ago
- Genome-wide scan for balancing selection using beta statistic☆28Updated last year
- ☆16Updated 3 years ago
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 9 months ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 5 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 6 years ago
- Phasing reads with secondary alignments☆17Updated 2 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 11 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 4 months ago
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆9Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 8 months ago
- This is the Haplotypo repository☆20Updated 8 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year