Alternatives and similar repositories for WITCH:

Users that are interested in WITCH are comparing it to the libraries listed below

• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆30Updated last month
• balabanmetin / uDance
  ☆43Updated 9 months ago
• PalMuc / TransPi
  TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
  ☆26Updated 3 years ago
• danny-wilson / genomegaMap
  Within-species genome-wide dN/dS estimation from very many genomes
  ☆19Updated 4 years ago
• xonq / mycotools
  ☆13Updated 3 weeks ago
• c5shen / EMMA
  an ensemble usage of MAFFT-linsi --add on large datasets
  ☆12Updated 8 months ago
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆30Updated last month
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆28Updated 2 weeks ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated last year
• slimsuite / buscomp
  BUSCOMP: BUSCO Compiler and Comparison tool
  ☆21Updated 4 months ago
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆14Updated last year
• dvdylus / read2tree
  ☆20Updated 2 years ago
• Gaius-Augustus / learnMSA
  Learning and Aligning Large Protein Families with support of protein language models.
  ☆20Updated 3 weeks ago
• Rowena-h / BUSCOfilter
  A tool to filter BUSCO output into single-copy gene files for phylogenomics
  ☆12Updated 6 months ago
• chmccarthy / Pangloss
  Pangenome analysis of eukaryotes.
  ☆18Updated 4 years ago
• LKremer / MSA_trimmer
  Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
  ☆17Updated 5 years ago
• zheminzhou / pHierCC
  Hierarchical clustering of cgMLST
  ☆11Updated last year
• ccdmb / predector
  Effector prediction pipeline based on protein properties.
  ☆11Updated 5 months ago
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆24Updated 3 weeks ago
• rrwick / Small-plasmid-Nanopore
  ☆11Updated 3 years ago
• drboothtj / getphylo
  a python package for automated generation of phylogenetic trees from genbank files
  ☆18Updated last month
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆33Updated 6 years ago
• gengit / PosiGene
  ☆26Updated 3 years ago
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆30Updated last year
• simonwhelan / Divvier
  A program for divvying or partially filtering multiple sequence alignments
  ☆24Updated 5 years ago
• Gaius-Augustus / GUSHR
  Generating UTRs from SHort Reads
  ☆11Updated 4 years ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆64Updated this week
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆31Updated 2 years ago
• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆30Updated 5 years ago
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated last year