c5shen / WITCHLinks
WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.
☆12Updated last month
Alternatives and similar repositories for WITCH
Users that are interested in WITCH are comparing it to the libraries listed below
Sorting:
- an ensemble usage of MAFFT-linsi --add on large datasets☆12Updated last year
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Updated 11 months ago
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆36Updated 5 months ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆10Updated 4 years ago
- Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…☆14Updated last month
- Within-species genome-wide dN/dS estimation from very many genomes☆21Updated 4 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 8 months ago
- AncestralClust☆11Updated last month
- Influenza genome analysis Nextflow workflow☆28Updated last week
- Merging assemblies by using adjacency algebraic model and classification☆23Updated 2 years ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Updated last year
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆20Updated 3 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆27Updated last month
- MIRA sequence assembler☆29Updated 7 months ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated last year
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Updated 9 months ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆12Updated 6 years ago
- ☆11Updated 3 years ago
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 5 years ago
- Hierarchical clustering of cgMLST☆11Updated last year
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- Synteny Mapping and Analysis Program☆27Updated 3 weeks ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Updated last year
- convert a blast output to a bed file☆12Updated 10 years ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆16Updated 5 months ago