c5shen / WITCH
WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.
☆12Updated 3 weeks ago
Alternatives and similar repositories for WITCH:
Users that are interested in WITCH are comparing it to the libraries listed below
- ☆13Updated 2 months ago
- ☆20Updated 2 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆21Updated this week
- Improved Inference of Ortholog Groups using Hidden Markov Models☆33Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month
- an ensemble usage of MAFFT-linsi --add on large datasets☆12Updated 10 months ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆12Updated 8 months ago
- ☆11Updated 3 years ago
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- AncestralClust☆11Updated 11 months ago
- Within-species genome-wide dN/dS estimation from very many genomes☆19Updated 4 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated 3 weeks ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆31Updated this week
- ☆43Updated last year
- Influenza genome analysis Nextflow workflow☆26Updated last week
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 years ago
- Hierarchical clustering of cgMLST☆11Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- Population analysis PIPEline 🛠🧬☆16Updated last week
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Convert genbank files to a swath of other formats☆16Updated last year
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆44Updated 10 months ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆21Updated 7 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 6 months ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated 3 months ago
- Ancient microbiome snakemake workflow☆23Updated 3 months ago
- Influenza data pipeline to automate genotyping assignment☆29Updated last month
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 3 months ago
- Genomic sequence aligner☆23Updated this week
- Code for detecting genomic island insertions in clades of microbes.☆19Updated last year