WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.
☆13Nov 18, 2025Updated 7 months ago
Alternatives and similar repositories for WITCH
Users that are interested in WITCH are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf s…☆23Aug 19, 2021Updated 4 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- ☆23Mar 19, 2025Updated last year
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆12Jun 19, 2025Updated last year
- ☆43Apr 2, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆15Feb 24, 2025Updated last year
- SKSE plugin for BFCO - Attack Behavior Framework in Nexusmods: https://www.nexusmods.com/skyrimspecialedition/mods/117052☆14Jun 9, 2024Updated 2 years ago
- Ensemble of HMM methods (SEPP, TIPP, UPP)☆95Aug 11, 2025Updated 10 months ago
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- Clann: Investigation of phylogenomic signal using supertrees☆18Apr 21, 2026Updated 2 months ago
- ☆17Oct 21, 2024Updated last year
- spruceup☆25Aug 15, 2025Updated 10 months ago
- Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data☆16Jan 31, 2025Updated last year
- ☆10May 3, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Graph Clustering Merger☆36Mar 25, 2024Updated 2 years ago
- visualization of phylogenetic output files☆14Oct 23, 2023Updated 2 years ago
- Python version of PHLAWD☆23Oct 28, 2024Updated last year
- A Rust-based library for phylogenetic analysis and manipulation☆20Jun 26, 2026Updated last week
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data☆11Jul 13, 2020Updated 5 years ago
- A new graphical interface for RAxML☆23Jun 25, 2026Updated last week
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆55May 14, 2025Updated last year
- Rust continuation of the Skyrim AE Uncapper.☆11Apr 6, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Jan 17, 2023Updated 3 years ago
- A Mod that lets you display Player values, Faction Ranks in Custom Windows. There is a Window for inside the Inventory Menu as well that …☆16Nov 24, 2024Updated last year
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆17May 27, 2024Updated 2 years ago
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆33May 2, 2025Updated last year
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆13Jul 19, 2023Updated 2 years ago
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆12Apr 25, 2024Updated 2 years ago
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆28Jan 2, 2022Updated 4 years ago
- phy-mer☆11Oct 12, 2017Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆28Sep 8, 2016Updated 9 years ago
- Probabilistic single-individual haplotyping☆10Mar 15, 2019Updated 7 years ago
- Machine Learning MRes Material☆16Feb 11, 2026Updated 4 months ago
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- A program for divvying or partially filtering multiple sequence alignments☆28Oct 14, 2019Updated 6 years ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆87Jun 16, 2026Updated 2 weeks ago