c5shen / WITCH
WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.
☆11Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for WITCH
- an ensemble usage of MAFFT-linsi --add on large datasets☆11Updated 5 months ago
- AncestralClust☆11Updated 6 months ago
- A nextflow pipeline for polishing CLR assemblies☆16Updated last year
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆10Updated last year
- deep learning gene finder☆32Updated last week
- Learning and Aligning Large Protein Families (MSA-HMM)☆18Updated this week
- ☆20Updated 2 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆20Updated 3 months ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆10Updated this week
- Ancient microbiome snakemake workflow☆21Updated 4 months ago
- ☆12Updated 2 weeks ago
- Generating UTRs from SHort Reads☆9Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆33Updated this week
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last month
- Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new t…☆13Updated 4 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆12Updated 5 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 5 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆28Updated 7 months ago
- Within-species genome-wide dN/dS estimation from very many genomes☆19Updated 4 years ago
- ☆11Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 4 months ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆12Updated 3 months ago
- GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using referen…☆11Updated 4 years ago
- Influenza genome analysis Nextflow workflow☆22Updated last week
- An R package to infer and analyze synteny networks from protein sequences☆21Updated last month
- A program for divvying or partially filtering multiple sequence alignments☆22Updated 5 years ago
- Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree wit…☆16Updated last month