c5shen / EMMALinks
an ensemble usage of MAFFT-linsi --add on large datasets
☆12Updated last year
Alternatives and similar repositories for EMMA
Users that are interested in EMMA are comparing it to the libraries listed below
Sorting:
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 5 months ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆12Updated 3 months ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 6 months ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Updated 9 months ago
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- convert a blast output to a bed file☆12Updated 9 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆10Updated 2 years ago
- ☆15Updated 7 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- Merging assemblies by using adjacency algebraic model and classification☆23Updated last year
- ☆18Updated 6 months ago
- AC-DIAMOND is a DNA-protein alignment tool☆16Updated last year
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Updated 6 months ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated 8 months ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Updated 11 months ago
- ☆20Updated last year
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Better Alignments with Translated HMMER☆21Updated 2 weeks ago
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated last month
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Updated 6 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last month
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆14Updated last year
- A pipeline creation tool using Snakemake☆11Updated last week
- The shiny app that accompanies the ngsReports R package☆14Updated 3 years ago
- JTK -- a regional diploid genome assembler☆24Updated 7 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆32Updated last month
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Updated 4 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year