c5shen / EMMALinks
an ensemble usage of MAFFT-linsi --add on large datasets
☆13Updated last year
Alternatives and similar repositories for EMMA
Users that are interested in EMMA are comparing it to the libraries listed below
Sorting:
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 8 months ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 9 months ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Updated last year
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆12Updated 2 months ago
- ☆11Updated 3 months ago
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆10Updated 2 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated 11 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆12Updated 3 years ago
- ☆26Updated 4 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated last month
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- A filter algorithm with program to filter an alignment or mapping file☆10Updated 3 months ago
- Iterative error correction of long reads☆13Updated 2 years ago
- ☆14Updated 2 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- run-length BWT tools for genomic sequences☆19Updated 3 years ago
- JTK -- a regional diploid genome assembler☆25Updated 10 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 3 weeks ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 8 months ago
- Better Alignments with Translated HMMER☆21Updated last week
- k-mer similarity analysis pipeline☆22Updated last month
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- ☆10Updated 5 years ago
- ☆15Updated 7 years ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Updated last year
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago