c5shen / EMMALinks
an ensemble usage of MAFFT-linsi --add on large datasets
☆13Updated last year
Alternatives and similar repositories for EMMA
Users that are interested in EMMA are comparing it to the libraries listed below
Sorting:
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organism Genomes to Advance Comparative Genomics☆13Updated last month
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated last year
- Homologizer: phasing gene copies into polyploid subgenomes☆11Updated 3 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Updated last year
- ☆13Updated 7 months ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Updated last year
- Generating UTRs from SHort Reads☆12Updated 5 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated last year
- run-length BWT tools for genomic sequences☆19Updated 3 years ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Updated last month
- ☆26Updated 4 years ago
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated 5 months ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 5 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated 2 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12Updated 7 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Updated 5 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Updated last year
- 🔎 wheeler graph recognition algorithm, visualization and generation☆21Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last month
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago
- Variant call verification☆16Updated 7 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 6 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated 2 months ago
- DNN-based small variant caller☆12Updated 3 years ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Updated 2 years ago
- JTK -- a regional diploid genome assembler☆25Updated last year
- ☆14Updated 7 months ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- k-mer similarity analysis pipeline☆23Updated last month