Alternatives and similar repositories for EMMA:

Users that are interested in EMMA are comparing it to the libraries listed below

• c5shen / WITCH
  WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.
  ☆12Updated 3 weeks ago
• kammoji / gapFinisher
  A reliable gap filling pipeline for draft genomes
  ☆11Updated 5 years ago
• rikuu / Gap2Seq
  Gap2Seq is a gap filling and insertion genotyping tool.
  ☆21Updated 7 months ago
• wf8 / homologizer
  Homologizer: phasing gene copies into polyploid subgenomes
  ☆10Updated 2 years ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 3 months ago
• lauterbur / Flex-sweep
  Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.
  ☆14Updated last year
• ComparativeGenomicsToolkit / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆11Updated 4 months ago
• NDBL / HECIL
  Hybrid Error Correction of Long Reads using Iterative Learning
  ☆10Updated 6 years ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆29Updated 3 months ago
• Benson-Genomics-Lab / IRF
  Inverted Repeats Finder: a program to analyze DNA and RNA sequences
  ☆16Updated last month
• Gaius-Augustus / GUSHR
  Generating UTRs from SHort Reads
  ☆12Updated 4 years ago
• peng-ye / MetaPGN
  A pipeline for construction and graphical visualization of annotated pangenome networks.
  ☆17Updated 6 years ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated last year
• bioinfomaticsCSU / MAC
  Merging assemblies by using adjacency algebraic model and classification
  ☆23Updated last year
• lh3 / nasw
  Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift
  ☆19Updated 6 months ago
• yuansliu / minirmd
  ☆12Updated 2 years ago
• yanboANU / Kmer2SNP
  ☆26Updated 3 years ago
• fenghen360 / BLAST2OGMSA
  Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis
  ☆11Updated 6 years ago
• uio-bmi / NucBreak
  Location of structural errors in a genome assembly and structural variations between a pair of genomes
  ☆11Updated 5 years ago
• idanefroni / Conservatory
  Identification of conserved non-coding sequences in plants
  ☆16Updated 3 months ago
• davidemms / STRIDE
  STRIDE: Species Tree Root Inference from Gene Duplication Events
  ☆11Updated 6 years ago
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆18Updated this week
• isugifNF / polishCLR
  A nextflow pipeline for polishing CLR assemblies
  ☆17Updated 2 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆21Updated 4 years ago
• JLSteenwyk / BioKIT
  a versatile toolkit for processing and analyzing diverse types of sequence data
  ☆21Updated 3 months ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆20Updated 2 months ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆22Updated 3 months ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated last year
• makovalab-psu / T2T_primate_XY
  ☆13Updated 9 months ago
• photocyte / plot_mitochondrial_genome_with_CIRCOS
  ☆15Updated 7 years ago